Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:54:57 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE iCheck PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 849/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
iCheck 1.18.0 Weiliang Qiu
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: iCheck |
Version: 1.18.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:iCheck.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings iCheck_1.18.0.tar.gz |
StartedAt: 2020-10-17 02:16:08 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 02:22:23 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 375.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: iCheck.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:iCheck.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings iCheck_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/iCheck.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘iCheck/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘iCheck’ version ‘1.18.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘iCheck’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
iCheck.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL iCheck ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘iCheck’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’ ** testing if installed package can be loaded from final location No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’ ** testing if installed package keeps a record of temporary installation path * DONE (iCheck)
iCheck.Rcheck/iCheck-Ex.timings
name | user | system | elapsed | |
LumiBatch2Table | 0.196 | 0.008 | 0.204 | |
R2PlotFunc | 0.358 | 0.028 | 0.386 | |
boxPlots | 0.276 | 0.020 | 0.296 | |
densityPlots | 0.127 | 0.008 | 0.135 | |
genSimData.BayesNormal | 0.055 | 0.000 | 0.055 | |
getPCAFunc | 0.072 | 0.012 | 0.085 | |
glmWrapper | 0.676 | 0.004 | 0.679 | |
lkhrWrapper | 0.787 | 0.020 | 0.807 | |
lmFitPaired | 0.062 | 0.008 | 0.069 | |
lmFitWrapper | 0.063 | 0.007 | 0.070 | |
pca2DPlot | 0.117 | 0.004 | 0.121 | |
pca3DPlot | 0.075 | 0.012 | 0.087 | |
plotCurves | 0.06 | 0.00 | 0.06 | |
plotQCCurves | 0.090 | 0.004 | 0.094 | |
plotSamplep95p05 | 0.074 | 0.004 | 0.078 | |
quantilePlot | 0.120 | 0.004 | 0.124 | |
scatterPlots | 0.159 | 0.012 | 0.170 | |
sortExpressionSet | 0.075 | 0.008 | 0.084 | |