Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:50 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE hyperdraw PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 839/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
hyperdraw 1.40.0 Paul Murrell
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: hyperdraw |
Version: 1.40.0 |
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:hyperdraw.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings hyperdraw_1.40.0.tar.gz |
StartedAt: 2020-10-17 05:05:42 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 05:07:48 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 126.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: hyperdraw.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:hyperdraw.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings hyperdraw_1.40.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/hyperdraw.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'hyperdraw/DESCRIPTION' ... OK * this is package 'hyperdraw' version '1.40.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'hyperdraw' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'test.R' OK ** running tests for arch 'x64' ... Running 'test.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
hyperdraw.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/hyperdraw_1.40.0.tar.gz && rm -rf hyperdraw.buildbin-libdir && mkdir hyperdraw.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hyperdraw.buildbin-libdir hyperdraw_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL hyperdraw_1.40.0.zip && rm hyperdraw_1.40.0.tar.gz hyperdraw_1.40.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 13263 100 13263 0 0 198k 0 --:--:-- --:--:-- --:--:-- 219k install for i386 * installing *source* package 'hyperdraw' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'graphLayout' in package 'hyperdraw' ** help *** installing help indices converting help for package 'hyperdraw' finding HTML links ... done RagraphBPH-class html finding level-2 HTML links ... done graphBPH-class html graphBPH html graphLayout html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'hyperdraw' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'hyperdraw' as hyperdraw_1.40.0.zip * DONE (hyperdraw) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'hyperdraw' successfully unpacked and MD5 sums checked
hyperdraw.Rcheck/tests_i386/test.Rout R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > library(hyperdraw) > > # Check graph validation > > # Edges must be directed > > badgnel.1 <- new("graphNEL", + nodes=c("A", "R"), + edgeL=list( + A=list(edges="R"), + R=list(edges="A"))) > stopifnot(inherits(try(graphBPH(badgnel.1, "")), "try-error")) Error in validGraphBPH(.Object) : All edges must be between a normal node and an edge node > > # All edges must be between normal node and edge node > badgnel.2 <- new("graphNEL", + nodes=c("A", "B"), + edgeL=list( + A=list(edges="B"), + B=list(edges="A")), + edgemode="directed") > stopifnot(inherits(try(graphBPH(badgnel.2, "")), "try-error")) Error in validGraphBPH(.Object) : All edges must be between a normal node and an edge node > > # If it's a Hypergraph, all Hyperedges must be DirectedHyperedges > > require(hypergraph) Loading required package: hypergraph Loading required package: graph Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min > > badhg <- Hypergraph(c("A", "B"), list(Hyperedge(c("A", "B")))) > stopifnot(inherits(try(graphBPH(badhg)), "try-error")) Error in graphBPH(badhg) : All hyperedges must be directed hyperedges > > # Examples in man pages test simple examples that should work > > > proc.time() user system elapsed 1.26 0.03 1.26 |
hyperdraw.Rcheck/tests_x64/test.Rout R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > library(hyperdraw) > > # Check graph validation > > # Edges must be directed > > badgnel.1 <- new("graphNEL", + nodes=c("A", "R"), + edgeL=list( + A=list(edges="R"), + R=list(edges="A"))) > stopifnot(inherits(try(graphBPH(badgnel.1, "")), "try-error")) Error in validGraphBPH(.Object) : All edges must be between a normal node and an edge node > > # All edges must be between normal node and edge node > badgnel.2 <- new("graphNEL", + nodes=c("A", "B"), + edgeL=list( + A=list(edges="B"), + B=list(edges="A")), + edgemode="directed") > stopifnot(inherits(try(graphBPH(badgnel.2, "")), "try-error")) Error in validGraphBPH(.Object) : All edges must be between a normal node and an edge node > > # If it's a Hypergraph, all Hyperedges must be DirectedHyperedges > > require(hypergraph) Loading required package: hypergraph Loading required package: graph Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min > > badhg <- Hypergraph(c("A", "B"), list(Hyperedge(c("A", "B")))) > stopifnot(inherits(try(graphBPH(badhg)), "try-error")) Error in graphBPH(badhg) : All hyperedges must be directed hyperedges > > # Examples in man pages test simple examples that should work > > > proc.time() user system elapsed 1.03 0.07 1.09 |
hyperdraw.Rcheck/examples_i386/hyperdraw-Ex.timings
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hyperdraw.Rcheck/examples_x64/hyperdraw-Ex.timings
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