Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:40 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE genoset PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 716/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
genoset 1.44.0 Peter M. Haverty
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: genoset |
Version: 1.44.0 |
Command: rm -rf genoset.buildbin-libdir && mkdir genoset.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genoset.buildbin-libdir genoset_1.44.0.tar.gz |
StartedAt: 2020-10-17 10:38:29 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 10:39:26 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 56.4 seconds |
RetCode: 0 |
Status: OK |
PackageFile: genoset_1.44.0.zip |
PackageFileSize: 1.326 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf genoset.buildbin-libdir && mkdir genoset.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genoset.buildbin-libdir genoset_1.44.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'genoset' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bounds.c -o bounds.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rangeSummaries.c -o rangeSummaries.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o genoset.dll tmp.def bounds.o init.o rangeSummaries.o utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/genoset.buildbin-libdir/00LOCK-genoset/00new/genoset/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'genoset' finding HTML links ... done GenoSet-class html finding level-2 HTML links ... done RleDataFrame-class html RleDataFrame-views html baf2mbaf html boundingIndices html boundingIndicesByChr html bounds2Rle html calcGC html calcGC2 html chr-methods html chrIndices-methods html chrInfo-methods html chrNames-methods html chrOrder html chrPartitioning html cn2lr-methods html do_rledf_range_summary html do_rledf_views html fixSegNAs html gcCorrect html genoPlot-methods html genoPos-methods html genome html genomeAxis html genomicranges-methods html genoset-dataset html genoset-methods html genoset-package html genoset-subset html isGenomeOrder html lr2cn html modeCenter html numCallable html pos-methods html rangeSampleMeans html rangeSegMeanLength-methods html rbindDataframe html readGenoSet html runCBS html segPairTable-methods html segTable-methods html segs2Granges html segs2Rle html segs2RleDataFrame html toGenomeOrder html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'genoset' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bounds.c -o bounds.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rangeSummaries.c -o rangeSummaries.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o genoset.dll tmp.def bounds.o init.o rangeSummaries.o utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/genoset.buildbin-libdir/genoset/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'genoset' as genoset_1.44.0.zip * DONE (genoset)