Altuna Akalin
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/genomation |
| Branch: RELEASE_3_11 |
| Last Commit: 31de677 |
| Last Changed Date: 2020-04-27 14:45:32 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:39 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE genomation PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 702/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| genomation 1.20.0 Altuna Akalin
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: genomation |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/genomation_1.20.0.tar.gz && rm -rf genomation.buildbin-libdir && mkdir genomation.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genomation.buildbin-libdir genomation_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL genomation_1.20.0.zip && rm genomation_1.20.0.tar.gz genomation_1.20.0.zip |
| StartedAt: 2020-10-16 18:46:17 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:48:42 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 145.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/genomation_1.20.0.tar.gz && rm -rf genomation.buildbin-libdir && mkdir genomation.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genomation.buildbin-libdir genomation_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL genomation_1.20.0.zip && rm genomation_1.20.0.tar.gz genomation_1.20.0.zip
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install for i386
* installing *source* package 'genomation' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c binSum.cpp -o binSum.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o genomation.dll tmp.def RcppExports.o binSum.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/genomation.buildbin-libdir/00LOCK-genomation/00new/genomation/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'genomation'
finding HTML links ... done
AnnotationByFeature-class html
AnnotationByGeneParts-class html
AnnotationByGeneParts-methods html
Max_c html
Mean_c html
Median_c html
Min_c html
Ops-ScoreMatrix-ScoreMatrix-method html
Ops-ScoreMatrixList-ScoreMatrixList-method
html
Ops-ScoreMatrixList-numeric-method html
Ops-numeric-ScoreMatrixList-method html
RandomEnrichment-class html
ScoreMatrix-class html
ScoreMatrix-methods html
ScoreMatrixBin-methods html
ScoreMatrixList-class html
ScoreMatrixList-methods html
Sum_c html
annotatGrWithGeneParts html
annotateWithFeature-methods html
annotateWithFeatureFlank-methods html
annotateWithFeatures-methods html
annotateWithGeneParts-methods html
finding level-2 HTML links ... done
bed12ToExons html
bed12ToIntrons html
binMatrix-methods html
binMax html
binMean html
binMedian html
binMin html
binSum html
binner html
c.ScoreMatrix html
c.ScoreMatrixList html
cage html
calculateOverlapSignificance-methods html
checkBedValidity html
checkClass html
compressedAndUrl2temp html
constrainRanges html
convertBed2Exons-methods html
convertBed2Introns-methods html
convertBedDf-methods html
cpgi html
detectUCSCheader html
distance2NearestFeature html
enrichmentMatrix-ScoreMatrix-method html
enrichmentMatrix-ScoreMatrixList-ScoreMatrix-method
html
enrichmentMatrix-ScoreMatrixList-method
html
file.ext html
findFeatureComb-methods html
galpTo2Ranges html
genes html
getColors html
getFeatsWithTargetsStats-methods html
getFlanks-methods html
getMembers-methods html
getRandomEnrichment-methods html
getTargetAnnotationStats-methods html
gffToGRanges html
heatMatrix html
heatMeta html
heatTargetAnnotation-methods html
intersectScoreMatrixList-methods html
listSliceMax html
listSliceMean html
listSliceMedian html
listSliceMin html
listSliceSum html
multiHeatMatrix html
orderBy-methods html
patternMatrix-methods html
plotMeta html
plotTargetAnnotation-methods html
promoters html
randomizeFeature-methods html
read.zip html
readBam html
readBed html
readBigWig html
readBroadPeak html
readFeatureFlank-methods html
readGeneric html
readNarrowPeak html
readTableFast html
readTranscriptFeatures-methods html
scaleScoreMatrix-methods html
scaleScoreMatrixList html
show-methods html
sub-ScoreMatrix-ANY-ANY-ANY-method html
sub-ScoreMatrixList-ANY-ANY-ANY-method
html
target.type html
** building package indices
** installing vignettes
'GenomationManual.Rmd' using 'UTF-8'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'genomation' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c binSum.cpp -o binSum.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o genomation.dll tmp.def RcppExports.o binSum.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/genomation.buildbin-libdir/genomation/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genomation' as genomation_1.20.0.zip
* DONE (genomation)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'genomation' successfully unpacked and MD5 sums checked