Benjamin Haibe-Kains
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/genefu |
| Branch: RELEASE_3_11 |
| Last Commit: 4e5f5c7 |
| Last Changed Date: 2020-04-27 14:25:01 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:38 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE genefu PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 680/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| genefu 2.20.0 Benjamin Haibe-Kains
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: genefu |
| Version: 2.20.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/genefu_2.20.0.tar.gz && rm -rf genefu.buildbin-libdir && mkdir genefu.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genefu.buildbin-libdir genefu_2.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL genefu_2.20.0.zip && rm genefu_2.20.0.tar.gz genefu_2.20.0.zip |
| StartedAt: 2020-10-16 17:44:56 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:47:00 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 124.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/genefu_2.20.0.tar.gz && rm -rf genefu.buildbin-libdir && mkdir genefu.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genefu.buildbin-libdir genefu_2.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL genefu_2.20.0.zip && rm genefu_2.20.0.tar.gz genefu_2.20.0.zip
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install for i386
* installing *source* package 'genefu' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'genefu'
finding HTML links ... done
bimod html
boxplotplus2 html
claudinLow html
claudinLowData html
collapseIDs html
compare.proto.cor html
compute.pairw.cor.meta html
compute.pairw.cor.z html
compute.proto.cor.meta html
cordiff.dep html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKu2kEq/R.INSTALL18e41d594545/genefu/man/cordiff.dep.Rd:53: file link 'compareProtoCor' in package 'genefu' does not exist and so has been treated as a topic
endoPredict html
expos html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKu2kEq/R.INSTALL18e41d594545/genefu/man/expos.Rd:23: file link 'data.expos' in package 'genefu' does not exist and so has been treated as a topic
fuzzy.ttest html
gene70 html
gene76 html
genefu-package html
geneid.map html
genius html
ggi html
ihc4 html
intrinsic.cluster html
intrinsic.cluster.predict html
map.datasets html
medianCtr html
mod1 html
mod2 html
modelOvcAngiogenic html
molecular.subtyping html
nkis html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKu2kEq/R.INSTALL18e41d594545/genefu/man/nkis.Rd:23: file link 'data.nkis' in package 'genefu' does not exist and so has been treated as a topic
npi html
oncotypedx html
ovcAngiogenic html
ovcCrijns html
ovcTCGA html
ovcYoshihara html
overlapSets html
pam50 html
pik3cags html
power.cor html
ps.cluster html
read.m.file html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKu2kEq/R.INSTALL18e41d594545/genefu/man/read.m.file.Rd:16: file link 'read.csv' in package 'utils' does not exist and so has been treated as a topic
readArray html
rename.duplicate html
rescale html
rorS html
scmgene.robust html
scmod1.robust html
scmod2.robust html
setcolclass.df html
sig.endoPredict html
sig.gene70 html
sig.gene76 html
sig.genius html
sig.ggi html
sig.oncotypedx html
sig.pik3cags html
sig.score html
sig.tamr13 html
sigOvcAngiogenic html
sigOvcCrijns html
sigOvcSpentzos html
sigOvcTCGA html
sigOvcYoshihara html
spearmanCI html
ssp2003 html
ssp2006 html
st.gallen html
stab.fs html
stab.fs.ranking html
strescR html
subtype.cluster html
subtype.cluster.predict html
tamr13 html
tbrm html
vdxs html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKu2kEq/R.INSTALL18e41d594545/genefu/man/vdxs.Rd:23: file link 'data.vdxs' in package 'genefu' does not exist and so has been treated as a topic
weighted.meanvar html
write.m.file html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKu2kEq/R.INSTALL18e41d594545/genefu/man/write.m.file.Rd:22: file link 'read.csv' in package 'utils' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'genefu' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genefu' as genefu_2.20.0.zip
* DONE (genefu)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'genefu' successfully unpacked and MD5 sums checked