Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:37 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE gcrma PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 662/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
gcrma 2.60.0 Z. Wu
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: gcrma |
Version: 2.60.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/gcrma_2.60.0.tar.gz && rm -rf gcrma.buildbin-libdir && mkdir gcrma.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcrma.buildbin-libdir gcrma_2.60.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL gcrma_2.60.0.zip && rm gcrma_2.60.0.tar.gz gcrma_2.60.0.zip |
StartedAt: 2020-10-16 17:24:11 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 17:24:58 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 47.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/gcrma_2.60.0.tar.gz && rm -rf gcrma.buildbin-libdir && mkdir gcrma.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcrma.buildbin-libdir gcrma_2.60.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL gcrma_2.60.0.zip && rm gcrma_2.60.0.tar.gz gcrma_2.60.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 23110 100 23110 0 0 347k 0 --:--:-- --:--:-- --:--:-- 389k install for i386 * installing *source* package 'gcrma' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c baseProfile.c -o baseProfile.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c computeAffinities.c -o computeAffinities.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c postmean.c -o postmean.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o gcrma.dll tmp.def baseProfile.o computeAffinities.o postmean.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/gcrma.buildbin-libdir/00LOCK-gcrma/00new/gcrma/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gcrma' finding HTML links ... done affinity.spline.coefs html bg.adjust.affinities html bg.adjust.gcrma html bg.parameters.ns html compute.affinities html fast.bkg html gcrma html gcrma.engine html gcrma.engine2 html getCDF html justGCRMA html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'gcrma' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c baseProfile.c -o baseProfile.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c computeAffinities.c -o computeAffinities.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c postmean.c -o postmean.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o gcrma.dll tmp.def baseProfile.o computeAffinities.o postmean.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/gcrma.buildbin-libdir/gcrma/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'gcrma' as gcrma_2.60.0.zip * DONE (gcrma) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'gcrma' successfully unpacked and MD5 sums checked