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###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:flowClust.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings flowClust_3.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/flowClust.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowClust/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowClust’ version ‘3.26.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowClust’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.7Mb
  sub-directories of 1Mb or more:
    libs   7.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘flowViz:::fplot’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/home/biocbuild/bbs-3.11-bioc/R/library/flowClust/libs/flowClust.so’:
  Found ‘__printf_chk’, possibly from ‘printf’ (C)
  Found ‘abort’, possibly from ‘abort’ (C)
  Found ‘stderr’, possibly from ‘stderr’ (C)
  Found ‘stdout’, possibly from ‘stdout’ (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.11-bioc/meat/flowClust.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL flowClust
###
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘flowClust’ ...
** using staged installation
configure: Using bundled GSL.
configure: Searching for the compilers specified by R.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
untarring gsl...
configure: Preparing to compile GSL.
configure: Configuring bundled GSL.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether make sets $(MAKE)... (cached) yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking whether ln -s works... yes
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for size_t... yes
checking for working volatile... yes
checking for inline... inline
checking whether char is unsigned... no
checking for GNU-style extern inline... no
checking for C99-style inline... yes
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking for vprintf... yes
checking for _doprnt... no
checking for memcpy... yes
checking for memmove... yes
checking for strdup... yes
checking for strtol... yes
checking for strtoul... yes
checking for EXIT_SUCCESS and EXIT_FAILURE... yes
checking for cos in -lm... yes
checking whether feenableexcept is declared... yes
checking whether fesettrapenable is declared... no
checking whether hypot is declared... yes
checking whether expm1 is declared... yes
checking whether acosh is declared... yes
checking whether asinh is declared... yes
checking whether atanh is declared... yes
checking whether ldexp is declared... yes
checking whether frexp is declared... yes
checking whether isinf is declared... yes
checking whether isfinite is declared... yes
checking whether finite is declared... yes
checking whether isnan is declared... yes
checking whether log1p is declared... yes
checking for long double stdio... yes
checking for extended floating point registers... yes
checking for IEEE arithmetic interface type... gnux86
checking for FPU_SETCW... yes
checking for SSE extensions... yes
checking for IEEE compiler flags... none
checking for IEEE comparisons... yes
checking for IEEE denormalized values... yes
configure: creating ./config.status
config.status: creating gsl_version.h
config.status: creating gsl.spec
config.status: creating gsl/Makefile
config.status: creating block/Makefile
config.status: creating matrix/Makefile
config.status: creating vector/Makefile
config.status: creating rng/Makefile
config.status: creating randist/Makefile
config.status: creating cdf/Makefile
config.status: creating cblas/Makefile
config.status: creating specfunc/Makefile
config.status: creating linalg/Makefile
config.status: creating statistics/Makefile
config.status: creating blas/Makefile
config.status: creating roots/Makefile
config.status: creating err/Makefile
config.status: creating min/Makefile
config.status: creating permutation/Makefile
config.status: creating complex/Makefile
config.status: creating sys/Makefile
config.status: creating eigen/Makefile
config.status: creating Makefile
config.status: creating config.h
config.status: executing libtool commands
cp: will not overwrite just-created 'gsl/test.h' with 'roots/test.h'
cp: will not overwrite just-created 'gsl/error.h' with 'specfunc/error.h'
cp: will not overwrite just-created 'gsl/view.h' with 'vector/view.h'
Making install in gsl
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/gsl'
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/gsl'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/gsl'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/gsl'
Making install in block
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/block'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o init.lo init.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c init.c  -fPIC -DPIC -o .libs/init.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o file.lo file.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c file.c  -fPIC -DPIC -o .libs/file.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o block.lo block.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c block.c  -fPIC -DPIC -o .libs/block.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslblock.la  init.lo file.lo block.lo  -lm 
libtool: link: ar cru .libs/libgslblock.a .libs/init.o .libs/file.o .libs/block.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslblock.a
libtool: link: ( cd ".libs" && rm -f "libgslblock.la" && ln -s "../libgslblock.la" "libgslblock.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/block'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_block.h gsl_block_char.h gsl_block_complex_double.h gsl_block_complex_float.h gsl_block_complex_long_double.h gsl_block_double.h gsl_block_float.h gsl_block_int.h gsl_block_long.h gsl_block_long_double.h gsl_block_short.h gsl_block_uchar.h gsl_block_uint.h gsl_block_ulong.h gsl_block_ushort.h gsl_check_range.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/block'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/block'
Making install in matrix
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/matrix'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o init.lo init.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c init.c  -fPIC -DPIC -o .libs/init.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o matrix.lo matrix.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c matrix.c  -fPIC -DPIC -o .libs/matrix.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o file.lo file.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c file.c  -fPIC -DPIC -o .libs/file.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o rowcol.lo rowcol.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rowcol.c  -fPIC -DPIC -o .libs/rowcol.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o swap.lo swap.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c swap.c  -fPIC -DPIC -o .libs/swap.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o copy.lo copy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c copy.c  -fPIC -DPIC -o .libs/copy.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o minmax.lo minmax.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c minmax.c  -fPIC -DPIC -o .libs/minmax.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o prop.lo prop.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c prop.c  -fPIC -DPIC -o .libs/prop.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o oper.lo oper.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c oper.c  -fPIC -DPIC -o .libs/oper.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o getset.lo getset.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c getset.c  -fPIC -DPIC -o .libs/getset.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o view.lo view.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c view.c  -fPIC -DPIC -o .libs/view.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o submatrix.lo submatrix.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c submatrix.c  -fPIC -DPIC -o .libs/submatrix.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslmatrix.la  init.lo matrix.lo file.lo rowcol.lo swap.lo copy.lo minmax.lo prop.lo oper.lo getset.lo view.lo submatrix.lo  -lm 
libtool: link: ar cru .libs/libgslmatrix.a .libs/init.o .libs/matrix.o .libs/file.o .libs/rowcol.o .libs/swap.o .libs/copy.o .libs/minmax.o .libs/prop.o .libs/oper.o .libs/getset.o .libs/view.o .libs/submatrix.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslmatrix.a
libtool: link: ( cd ".libs" && rm -f "libgslmatrix.la" && ln -s "../libgslmatrix.la" "libgslmatrix.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/matrix'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_matrix.h gsl_matrix_char.h gsl_matrix_complex_double.h gsl_matrix_complex_float.h gsl_matrix_complex_long_double.h gsl_matrix_double.h gsl_matrix_float.h gsl_matrix_int.h gsl_matrix_long.h gsl_matrix_long_double.h gsl_matrix_short.h gsl_matrix_uchar.h gsl_matrix_uint.h gsl_matrix_ulong.h gsl_matrix_ushort.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/matrix'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/matrix'
Making install in vector
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/vector'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o init.lo init.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c init.c  -fPIC -DPIC -o .libs/init.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o file.lo file.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c file.c  -fPIC -DPIC -o .libs/file.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o vector.lo vector.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c vector.c  -fPIC -DPIC -o .libs/vector.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o copy.lo copy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c copy.c  -fPIC -DPIC -o .libs/copy.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o swap.lo swap.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c swap.c  -fPIC -DPIC -o .libs/swap.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o prop.lo prop.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c prop.c  -fPIC -DPIC -o .libs/prop.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o minmax.lo minmax.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c minmax.c  -fPIC -DPIC -o .libs/minmax.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o oper.lo oper.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c oper.c  -fPIC -DPIC -o .libs/oper.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o reim.lo reim.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c reim.c  -fPIC -DPIC -o .libs/reim.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o subvector.lo subvector.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c subvector.c  -fPIC -DPIC -o .libs/subvector.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o view.lo view.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c view.c  -fPIC -DPIC -o .libs/view.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslvector.la  init.lo file.lo vector.lo copy.lo swap.lo prop.lo minmax.lo oper.lo reim.lo subvector.lo view.lo  -lm 
libtool: link: ar cru .libs/libgslvector.a .libs/init.o .libs/file.o .libs/vector.o .libs/copy.o .libs/swap.o .libs/prop.o .libs/minmax.o .libs/oper.o .libs/reim.o .libs/subvector.o .libs/view.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslvector.a
libtool: link: ( cd ".libs" && rm -f "libgslvector.la" && ln -s "../libgslvector.la" "libgslvector.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/vector'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_vector.h gsl_vector_char.h gsl_vector_complex.h gsl_vector_complex_double.h gsl_vector_complex_float.h gsl_vector_complex_long_double.h gsl_vector_double.h gsl_vector_float.h gsl_vector_int.h gsl_vector_long.h gsl_vector_long_double.h gsl_vector_short.h gsl_vector_uchar.h gsl_vector_uint.h gsl_vector_ulong.h gsl_vector_ushort.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/vector'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/vector'
Making install in rng
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/rng'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o borosh13.lo borosh13.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c borosh13.c  -fPIC -DPIC -o .libs/borosh13.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cmrg.lo cmrg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cmrg.c  -fPIC -DPIC -o .libs/cmrg.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o coveyou.lo coveyou.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c coveyou.c  -fPIC -DPIC -o .libs/coveyou.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o default.lo default.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c default.c  -fPIC -DPIC -o .libs/default.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o file.lo file.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c file.c  -fPIC -DPIC -o .libs/file.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o fishman18.lo fishman18.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fishman18.c  -fPIC -DPIC -o .libs/fishman18.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o fishman20.lo fishman20.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fishman20.c  -fPIC -DPIC -o .libs/fishman20.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o fishman2x.lo fishman2x.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fishman2x.c  -fPIC -DPIC -o .libs/fishman2x.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gfsr4.lo gfsr4.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gfsr4.c  -fPIC -DPIC -o .libs/gfsr4.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o knuthran2.lo knuthran2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c knuthran2.c  -fPIC -DPIC -o .libs/knuthran2.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o knuthran.lo knuthran.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c knuthran.c  -fPIC -DPIC -o .libs/knuthran.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o knuthran2002.lo knuthran2002.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c knuthran2002.c  -fPIC -DPIC -o .libs/knuthran2002.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o lecuyer21.lo lecuyer21.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lecuyer21.c  -fPIC -DPIC -o .libs/lecuyer21.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o minstd.lo minstd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c minstd.c  -fPIC -DPIC -o .libs/minstd.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o mrg.lo mrg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mrg.c  -fPIC -DPIC -o .libs/mrg.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o mt.lo mt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mt.c  -fPIC -DPIC -o .libs/mt.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o r250.lo r250.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c r250.c  -fPIC -DPIC -o .libs/r250.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ran0.lo ran0.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ran0.c  -fPIC -DPIC -o .libs/ran0.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ran1.lo ran1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ran1.c  -fPIC -DPIC -o .libs/ran1.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ran2.lo ran2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ran2.c  -fPIC -DPIC -o .libs/ran2.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ran3.lo ran3.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ran3.c  -fPIC -DPIC -o .libs/ran3.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o rand48.lo rand48.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rand48.c  -fPIC -DPIC -o .libs/rand48.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o rand.lo rand.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rand.c  -fPIC -DPIC -o .libs/rand.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o random.lo random.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c random.c  -fPIC -DPIC -o .libs/random.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o randu.lo randu.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c randu.c  -fPIC -DPIC -o .libs/randu.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ranf.lo ranf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ranf.c  -fPIC -DPIC -o .libs/ranf.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ranlux.lo ranlux.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ranlux.c  -fPIC -DPIC -o .libs/ranlux.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ranlxd.lo ranlxd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ranlxd.c  -fPIC -DPIC -o .libs/ranlxd.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ranlxs.lo ranlxs.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ranlxs.c  -fPIC -DPIC -o .libs/ranlxs.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ranmar.lo ranmar.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ranmar.c  -fPIC -DPIC -o .libs/ranmar.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o rng.lo rng.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rng.c  -fPIC -DPIC -o .libs/rng.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o slatec.lo slatec.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c slatec.c  -fPIC -DPIC -o .libs/slatec.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o taus.lo taus.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c taus.c  -fPIC -DPIC -o .libs/taus.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o taus113.lo taus113.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c taus113.c  -fPIC -DPIC -o .libs/taus113.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o transputer.lo transputer.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c transputer.c  -fPIC -DPIC -o .libs/transputer.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o tt.lo tt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c tt.c  -fPIC -DPIC -o .libs/tt.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o types.lo types.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c types.c  -fPIC -DPIC -o .libs/types.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o uni32.lo uni32.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c uni32.c  -fPIC -DPIC -o .libs/uni32.o
uni32.c:108:32: warning: 'MDIG' defined but not used [-Wunused-const-variable=]
 static const unsigned long int MDIG = 32;       /* Machine digits in int */
                                ^~~~
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o uni.lo uni.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c uni.c  -fPIC -DPIC -o .libs/uni.o
uni.c:108:27: warning: 'MDIG' defined but not used [-Wunused-const-variable=]
 static const unsigned int MDIG = 16;    /* Machine digits in int */
                           ^~~~
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o vax.lo vax.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c vax.c  -fPIC -DPIC -o .libs/vax.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o waterman14.lo waterman14.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c waterman14.c  -fPIC -DPIC -o .libs/waterman14.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o zuf.lo zuf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zuf.c  -fPIC -DPIC -o .libs/zuf.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o inline.lo inline.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c inline.c  -fPIC -DPIC -o .libs/inline.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslrng.la  borosh13.lo cmrg.lo coveyou.lo default.lo file.lo fishman18.lo fishman20.lo fishman2x.lo gfsr4.lo knuthran2.lo knuthran.lo knuthran2002.lo lecuyer21.lo minstd.lo mrg.lo mt.lo r250.lo ran0.lo ran1.lo ran2.lo ran3.lo rand48.lo rand.lo random.lo randu.lo ranf.lo ranlux.lo ranlxd.lo ranlxs.lo ranmar.lo rng.lo slatec.lo taus.lo taus113.lo transputer.lo tt.lo types.lo uni32.lo uni.lo vax.lo waterman14.lo zuf.lo inline.lo  -lm 
libtool: link: ar cru .libs/libgslrng.a .libs/borosh13.o .libs/cmrg.o .libs/coveyou.o .libs/default.o .libs/file.o .libs/fishman18.o .libs/fishman20.o .libs/fishman2x.o .libs/gfsr4.o .libs/knuthran2.o .libs/knuthran.o .libs/knuthran2002.o .libs/lecuyer21.o .libs/minstd.o .libs/mrg.o .libs/mt.o .libs/r250.o .libs/ran0.o .libs/ran1.o .libs/ran2.o .libs/ran3.o .libs/rand48.o .libs/rand.o .libs/random.o .libs/randu.o .libs/ranf.o .libs/ranlux.o .libs/ranlxd.o .libs/ranlxs.o .libs/ranmar.o .libs/rng.o .libs/slatec.o .libs/taus.o .libs/taus113.o .libs/transputer.o .libs/tt.o .libs/types.o .libs/uni32.o .libs/uni.o .libs/vax.o .libs/waterman14.o .libs/zuf.o .libs/inline.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslrng.a
libtool: link: ( cd ".libs" && rm -f "libgslrng.la" && ln -s "../libgslrng.la" "libgslrng.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/rng'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_rng.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/rng'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/rng'
Making install in randist
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/randist'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bernoulli.lo bernoulli.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bernoulli.c  -fPIC -DPIC -o .libs/bernoulli.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o beta.lo beta.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c beta.c  -fPIC -DPIC -o .libs/beta.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bigauss.lo bigauss.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bigauss.c  -fPIC -DPIC -o .libs/bigauss.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o binomial.lo binomial.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c binomial.c  -fPIC -DPIC -o .libs/binomial.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cauchy.lo cauchy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cauchy.c  -fPIC -DPIC -o .libs/cauchy.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o chisq.lo chisq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chisq.c  -fPIC -DPIC -o .libs/chisq.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dirichlet.lo dirichlet.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dirichlet.c  -fPIC -DPIC -o .libs/dirichlet.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o discrete.lo discrete.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c discrete.c  -fPIC -DPIC -o .libs/discrete.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o erlang.lo erlang.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c erlang.c  -fPIC -DPIC -o .libs/erlang.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o exponential.lo exponential.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exponential.c  -fPIC -DPIC -o .libs/exponential.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o exppow.lo exppow.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exppow.c  -fPIC -DPIC -o .libs/exppow.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o fdist.lo fdist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fdist.c  -fPIC -DPIC -o .libs/fdist.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o flat.lo flat.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c flat.c  -fPIC -DPIC -o .libs/flat.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gamma.lo gamma.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gamma.c  -fPIC -DPIC -o .libs/gamma.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gauss.lo gauss.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gauss.c  -fPIC -DPIC -o .libs/gauss.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gausszig.lo gausszig.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gausszig.c  -fPIC -DPIC -o .libs/gausszig.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gausstail.lo gausstail.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gausstail.c  -fPIC -DPIC -o .libs/gausstail.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o geometric.lo geometric.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c geometric.c  -fPIC -DPIC -o .libs/geometric.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gumbel.lo gumbel.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gumbel.c  -fPIC -DPIC -o .libs/gumbel.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hyperg.lo hyperg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg.c  -fPIC -DPIC -o .libs/hyperg.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o laplace.lo laplace.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c laplace.c  -fPIC -DPIC -o .libs/laplace.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o levy.lo levy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c levy.c  -fPIC -DPIC -o .libs/levy.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o logarithmic.lo logarithmic.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c logarithmic.c  -fPIC -DPIC -o .libs/logarithmic.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o logistic.lo logistic.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c logistic.c  -fPIC -DPIC -o .libs/logistic.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o lognormal.lo lognormal.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lognormal.c  -fPIC -DPIC -o .libs/lognormal.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o multinomial.lo multinomial.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c multinomial.c  -fPIC -DPIC -o .libs/multinomial.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o nbinomial.lo nbinomial.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c nbinomial.c  -fPIC -DPIC -o .libs/nbinomial.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o pareto.lo pareto.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c pareto.c  -fPIC -DPIC -o .libs/pareto.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o pascal.lo pascal.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c pascal.c  -fPIC -DPIC -o .libs/pascal.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o poisson.lo poisson.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c poisson.c  -fPIC -DPIC -o .libs/poisson.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o rayleigh.lo rayleigh.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rayleigh.c  -fPIC -DPIC -o .libs/rayleigh.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o shuffle.lo shuffle.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c shuffle.c  -fPIC -DPIC -o .libs/shuffle.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sphere.lo sphere.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sphere.c  -fPIC -DPIC -o .libs/sphere.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o tdist.lo tdist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c tdist.c  -fPIC -DPIC -o .libs/tdist.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o weibull.lo weibull.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c weibull.c  -fPIC -DPIC -o .libs/weibull.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o landau.lo landau.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c landau.c  -fPIC -DPIC -o .libs/landau.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o binomial_tpe.lo binomial_tpe.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c binomial_tpe.c  -fPIC -DPIC -o .libs/binomial_tpe.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslrandist.la  bernoulli.lo beta.lo bigauss.lo binomial.lo cauchy.lo chisq.lo dirichlet.lo discrete.lo erlang.lo exponential.lo exppow.lo fdist.lo flat.lo gamma.lo gauss.lo gausszig.lo gausstail.lo geometric.lo gumbel.lo hyperg.lo laplace.lo levy.lo logarithmic.lo logistic.lo lognormal.lo multinomial.lo nbinomial.lo pareto.lo pascal.lo poisson.lo rayleigh.lo shuffle.lo sphere.lo tdist.lo weibull.lo landau.lo binomial_tpe.lo  -lm 
libtool: link: ar cru .libs/libgslrandist.a .libs/bernoulli.o .libs/beta.o .libs/bigauss.o .libs/binomial.o .libs/cauchy.o .libs/chisq.o .libs/dirichlet.o .libs/discrete.o .libs/erlang.o .libs/exponential.o .libs/exppow.o .libs/fdist.o .libs/flat.o .libs/gamma.o .libs/gauss.o .libs/gausszig.o .libs/gausstail.o .libs/geometric.o .libs/gumbel.o .libs/hyperg.o .libs/laplace.o .libs/levy.o .libs/logarithmic.o .libs/logistic.o .libs/lognormal.o .libs/multinomial.o .libs/nbinomial.o .libs/pareto.o .libs/pascal.o .libs/poisson.o .libs/rayleigh.o .libs/shuffle.o .libs/sphere.o .libs/tdist.o .libs/weibull.o .libs/landau.o .libs/binomial_tpe.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslrandist.a
libtool: link: ( cd ".libs" && rm -f "libgslrandist.la" && ln -s "../libgslrandist.la" "libgslrandist.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/randist'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_randist.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/randist'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/randist'
Making install in cdf
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/cdf'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o beta.lo beta.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c beta.c  -fPIC -DPIC -o .libs/beta.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o betainv.lo betainv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c betainv.c  -fPIC -DPIC -o .libs/betainv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cauchy.lo cauchy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cauchy.c  -fPIC -DPIC -o .libs/cauchy.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cauchyinv.lo cauchyinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cauchyinv.c  -fPIC -DPIC -o .libs/cauchyinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o chisq.lo chisq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chisq.c  -fPIC -DPIC -o .libs/chisq.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o chisqinv.lo chisqinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chisqinv.c  -fPIC -DPIC -o .libs/chisqinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o exponential.lo exponential.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exponential.c  -fPIC -DPIC -o .libs/exponential.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o exponentialinv.lo exponentialinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exponentialinv.c  -fPIC -DPIC -o .libs/exponentialinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o exppow.lo exppow.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exppow.c  -fPIC -DPIC -o .libs/exppow.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o fdist.lo fdist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fdist.c  -fPIC -DPIC -o .libs/fdist.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o fdistinv.lo fdistinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fdistinv.c  -fPIC -DPIC -o .libs/fdistinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o flat.lo flat.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c flat.c  -fPIC -DPIC -o .libs/flat.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o flatinv.lo flatinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c flatinv.c  -fPIC -DPIC -o .libs/flatinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gamma.lo gamma.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gamma.c  -fPIC -DPIC -o .libs/gamma.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gammainv.lo gammainv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gammainv.c  -fPIC -DPIC -o .libs/gammainv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gauss.lo gauss.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gauss.c  -fPIC -DPIC -o .libs/gauss.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gaussinv.lo gaussinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gaussinv.c  -fPIC -DPIC -o .libs/gaussinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gumbel1.lo gumbel1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gumbel1.c  -fPIC -DPIC -o .libs/gumbel1.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gumbel1inv.lo gumbel1inv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gumbel1inv.c  -fPIC -DPIC -o .libs/gumbel1inv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gumbel2.lo gumbel2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gumbel2.c  -fPIC -DPIC -o .libs/gumbel2.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gumbel2inv.lo gumbel2inv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gumbel2inv.c  -fPIC -DPIC -o .libs/gumbel2inv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o laplace.lo laplace.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c laplace.c  -fPIC -DPIC -o .libs/laplace.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o laplaceinv.lo laplaceinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c laplaceinv.c  -fPIC -DPIC -o .libs/laplaceinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o logistic.lo logistic.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c logistic.c  -fPIC -DPIC -o .libs/logistic.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o logisticinv.lo logisticinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c logisticinv.c  -fPIC -DPIC -o .libs/logisticinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o lognormal.lo lognormal.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lognormal.c  -fPIC -DPIC -o .libs/lognormal.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o lognormalinv.lo lognormalinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lognormalinv.c  -fPIC -DPIC -o .libs/lognormalinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o pareto.lo pareto.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c pareto.c  -fPIC -DPIC -o .libs/pareto.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o paretoinv.lo paretoinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c paretoinv.c  -fPIC -DPIC -o .libs/paretoinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o rayleigh.lo rayleigh.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rayleigh.c  -fPIC -DPIC -o .libs/rayleigh.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o rayleighinv.lo rayleighinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rayleighinv.c  -fPIC -DPIC -o .libs/rayleighinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o tdist.lo tdist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c tdist.c  -fPIC -DPIC -o .libs/tdist.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o tdistinv.lo tdistinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c tdistinv.c  -fPIC -DPIC -o .libs/tdistinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o weibull.lo weibull.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c weibull.c  -fPIC -DPIC -o .libs/weibull.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o weibullinv.lo weibullinv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c weibullinv.c  -fPIC -DPIC -o .libs/weibullinv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o binomial.lo binomial.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c binomial.c  -fPIC -DPIC -o .libs/binomial.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o poisson.lo poisson.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c poisson.c  -fPIC -DPIC -o .libs/poisson.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o geometric.lo geometric.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c geometric.c  -fPIC -DPIC -o .libs/geometric.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o nbinomial.lo nbinomial.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c nbinomial.c  -fPIC -DPIC -o .libs/nbinomial.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o pascal.lo pascal.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c pascal.c  -fPIC -DPIC -o .libs/pascal.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hypergeometric.lo hypergeometric.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hypergeometric.c  -fPIC -DPIC -o .libs/hypergeometric.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslcdf.la  beta.lo betainv.lo cauchy.lo cauchyinv.lo chisq.lo chisqinv.lo exponential.lo exponentialinv.lo exppow.lo fdist.lo fdistinv.lo flat.lo flatinv.lo gamma.lo gammainv.lo gauss.lo gaussinv.lo gumbel1.lo gumbel1inv.lo gumbel2.lo gumbel2inv.lo laplace.lo laplaceinv.lo logistic.lo logisticinv.lo lognormal.lo lognormalinv.lo pareto.lo paretoinv.lo rayleigh.lo rayleighinv.lo tdist.lo tdistinv.lo weibull.lo weibullinv.lo binomial.lo poisson.lo geometric.lo nbinomial.lo pascal.lo hypergeometric.lo  -lm 
libtool: link: ar cru .libs/libgslcdf.a .libs/beta.o .libs/betainv.o .libs/cauchy.o .libs/cauchyinv.o .libs/chisq.o .libs/chisqinv.o .libs/exponential.o .libs/exponentialinv.o .libs/exppow.o .libs/fdist.o .libs/fdistinv.o .libs/flat.o .libs/flatinv.o .libs/gamma.o .libs/gammainv.o .libs/gauss.o .libs/gaussinv.o .libs/gumbel1.o .libs/gumbel1inv.o .libs/gumbel2.o .libs/gumbel2inv.o .libs/laplace.o .libs/laplaceinv.o .libs/logistic.o .libs/logisticinv.o .libs/lognormal.o .libs/lognormalinv.o .libs/pareto.o .libs/paretoinv.o .libs/rayleigh.o .libs/rayleighinv.o .libs/tdist.o .libs/tdistinv.o .libs/weibull.o .libs/weibullinv.o .libs/binomial.o .libs/poisson.o .libs/geometric.o .libs/nbinomial.o .libs/pascal.o .libs/hypergeometric.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslcdf.a
libtool: link: ( cd ".libs" && rm -f "libgslcdf.la" && ln -s "../libgslcdf.la" "libgslcdf.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/cdf'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_cdf.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/cdf'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/cdf'
Making install in cblas
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/cblas'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sasum.lo sasum.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sasum.c  -fPIC -DPIC -o .libs/sasum.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o saxpy.lo saxpy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c saxpy.c  -fPIC -DPIC -o .libs/saxpy.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o scasum.lo scasum.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c scasum.c  -fPIC -DPIC -o .libs/scasum.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o scnrm2.lo scnrm2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c scnrm2.c  -fPIC -DPIC -o .libs/scnrm2.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o scopy.lo scopy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c scopy.c  -fPIC -DPIC -o .libs/scopy.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sdot.lo sdot.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sdot.c  -fPIC -DPIC -o .libs/sdot.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sdsdot.lo sdsdot.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sdsdot.c  -fPIC -DPIC -o .libs/sdsdot.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sgbmv.lo sgbmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sgbmv.c  -fPIC -DPIC -o .libs/sgbmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sgemm.lo sgemm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sgemm.c  -fPIC -DPIC -o .libs/sgemm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sgemv.lo sgemv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sgemv.c  -fPIC -DPIC -o .libs/sgemv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sger.lo sger.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sger.c  -fPIC -DPIC -o .libs/sger.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o snrm2.lo snrm2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c snrm2.c  -fPIC -DPIC -o .libs/snrm2.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o srot.lo srot.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c srot.c  -fPIC -DPIC -o .libs/srot.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o srotg.lo srotg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c srotg.c  -fPIC -DPIC -o .libs/srotg.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o srotm.lo srotm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c srotm.c  -fPIC -DPIC -o .libs/srotm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o srotmg.lo srotmg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c srotmg.c  -fPIC -DPIC -o .libs/srotmg.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ssbmv.lo ssbmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssbmv.c  -fPIC -DPIC -o .libs/ssbmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sscal.lo sscal.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sscal.c  -fPIC -DPIC -o .libs/sscal.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sspmv.lo sspmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sspmv.c  -fPIC -DPIC -o .libs/sspmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sspr.lo sspr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sspr.c  -fPIC -DPIC -o .libs/sspr.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sspr2.lo sspr2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sspr2.c  -fPIC -DPIC -o .libs/sspr2.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sswap.lo sswap.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sswap.c  -fPIC -DPIC -o .libs/sswap.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ssymm.lo ssymm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssymm.c  -fPIC -DPIC -o .libs/ssymm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ssymv.lo ssymv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssymv.c  -fPIC -DPIC -o .libs/ssymv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ssyr.lo ssyr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssyr.c  -fPIC -DPIC -o .libs/ssyr.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ssyr2.lo ssyr2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssyr2.c  -fPIC -DPIC -o .libs/ssyr2.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ssyr2k.lo ssyr2k.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssyr2k.c  -fPIC -DPIC -o .libs/ssyr2k.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ssyrk.lo ssyrk.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssyrk.c  -fPIC -DPIC -o .libs/ssyrk.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o stbmv.lo stbmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c stbmv.c  -fPIC -DPIC -o .libs/stbmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o stbsv.lo stbsv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c stbsv.c  -fPIC -DPIC -o .libs/stbsv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o stpmv.lo stpmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c stpmv.c  -fPIC -DPIC -o .libs/stpmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o stpsv.lo stpsv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c stpsv.c  -fPIC -DPIC -o .libs/stpsv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o strmm.lo strmm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c strmm.c  -fPIC -DPIC -o .libs/strmm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o strmv.lo strmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c strmv.c  -fPIC -DPIC -o .libs/strmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o strsm.lo strsm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c strsm.c  -fPIC -DPIC -o .libs/strsm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o strsv.lo strsv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c strsv.c  -fPIC -DPIC -o .libs/strsv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dasum.lo dasum.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dasum.c  -fPIC -DPIC -o .libs/dasum.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o daxpy.lo daxpy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c daxpy.c  -fPIC -DPIC -o .libs/daxpy.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dcopy.lo dcopy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dcopy.c  -fPIC -DPIC -o .libs/dcopy.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ddot.lo ddot.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ddot.c  -fPIC -DPIC -o .libs/ddot.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dgbmv.lo dgbmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dgbmv.c  -fPIC -DPIC -o .libs/dgbmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dgemm.lo dgemm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dgemm.c  -fPIC -DPIC -o .libs/dgemm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dgemv.lo dgemv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dgemv.c  -fPIC -DPIC -o .libs/dgemv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dger.lo dger.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dger.c  -fPIC -DPIC -o .libs/dger.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dnrm2.lo dnrm2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dnrm2.c  -fPIC -DPIC -o .libs/dnrm2.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o drot.lo drot.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c drot.c  -fPIC -DPIC -o .libs/drot.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o drotg.lo drotg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c drotg.c  -fPIC -DPIC -o .libs/drotg.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o drotm.lo drotm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c drotm.c  -fPIC -DPIC -o .libs/drotm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o drotmg.lo drotmg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c drotmg.c  -fPIC -DPIC -o .libs/drotmg.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dsbmv.lo dsbmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsbmv.c  -fPIC -DPIC -o .libs/dsbmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dscal.lo dscal.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dscal.c  -fPIC -DPIC -o .libs/dscal.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dsdot.lo dsdot.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsdot.c  -fPIC -DPIC -o .libs/dsdot.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dspmv.lo dspmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dspmv.c  -fPIC -DPIC -o .libs/dspmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dspr.lo dspr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dspr.c  -fPIC -DPIC -o .libs/dspr.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dspr2.lo dspr2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dspr2.c  -fPIC -DPIC -o .libs/dspr2.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dswap.lo dswap.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dswap.c  -fPIC -DPIC -o .libs/dswap.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dsymm.lo dsymm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsymm.c  -fPIC -DPIC -o .libs/dsymm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dsymv.lo dsymv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsymv.c  -fPIC -DPIC -o .libs/dsymv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dsyr.lo dsyr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsyr.c  -fPIC -DPIC -o .libs/dsyr.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dsyr2.lo dsyr2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsyr2.c  -fPIC -DPIC -o .libs/dsyr2.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dsyr2k.lo dsyr2k.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsyr2k.c  -fPIC -DPIC -o .libs/dsyr2k.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dsyrk.lo dsyrk.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsyrk.c  -fPIC -DPIC -o .libs/dsyrk.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dtbmv.lo dtbmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtbmv.c  -fPIC -DPIC -o .libs/dtbmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dtbsv.lo dtbsv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtbsv.c  -fPIC -DPIC -o .libs/dtbsv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dtpmv.lo dtpmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtpmv.c  -fPIC -DPIC -o .libs/dtpmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dtpsv.lo dtpsv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtpsv.c  -fPIC -DPIC -o .libs/dtpsv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dtrmm.lo dtrmm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtrmm.c  -fPIC -DPIC -o .libs/dtrmm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dtrmv.lo dtrmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtrmv.c  -fPIC -DPIC -o .libs/dtrmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dtrsm.lo dtrsm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtrsm.c  -fPIC -DPIC -o .libs/dtrsm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dtrsv.lo dtrsv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtrsv.c  -fPIC -DPIC -o .libs/dtrsv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dzasum.lo dzasum.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dzasum.c  -fPIC -DPIC -o .libs/dzasum.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dznrm2.lo dznrm2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dznrm2.c  -fPIC -DPIC -o .libs/dznrm2.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c caxpy.c  -fPIC -DPIC -o .libs/caxpy.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ccopy.lo ccopy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ccopy.c  -fPIC -DPIC -o .libs/ccopy.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cdotc_sub.lo cdotc_sub.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cdotc_sub.c  -fPIC -DPIC -o .libs/cdotc_sub.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cdotu_sub.lo cdotu_sub.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cdotu_sub.c  -fPIC -DPIC -o .libs/cdotu_sub.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cgbmv.lo cgbmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cgbmv.c  -fPIC -DPIC -o .libs/cgbmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cgemm.lo cgemm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cgemm.c  -fPIC -DPIC -o .libs/cgemm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cgemv.lo cgemv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cgemv.c  -fPIC -DPIC -o .libs/cgemv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cgerc.lo cgerc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cgerc.c  -fPIC -DPIC -o .libs/cgerc.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cgeru.lo cgeru.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cgeru.c  -fPIC -DPIC -o .libs/cgeru.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o chbmv.lo chbmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chbmv.c  -fPIC -DPIC -o .libs/chbmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o chemm.lo chemm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chemm.c  -fPIC -DPIC -o .libs/chemm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o chemv.lo chemv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chemv.c  -fPIC -DPIC -o .libs/chemv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cher.lo cher.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cher.c  -fPIC -DPIC -o .libs/cher.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cher2.lo cher2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cher2.c  -fPIC -DPIC -o .libs/cher2.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cher2k.lo cher2k.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cher2k.c  -fPIC -DPIC -o .libs/cher2k.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cherk.lo cherk.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cherk.c  -fPIC -DPIC -o .libs/cherk.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o chpmv.lo chpmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chpmv.c  -fPIC -DPIC -o .libs/chpmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o chpr.lo chpr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chpr.c  -fPIC -DPIC -o .libs/chpr.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o chpr2.lo chpr2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chpr2.c  -fPIC -DPIC -o .libs/chpr2.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cscal.lo cscal.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cscal.c  -fPIC -DPIC -o .libs/cscal.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o csscal.lo csscal.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c csscal.c  -fPIC -DPIC -o .libs/csscal.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cswap.lo cswap.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cswap.c  -fPIC -DPIC -o .libs/cswap.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c csymm.c  -fPIC -DPIC -o .libs/csymm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o csyr2k.lo csyr2k.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c csyr2k.c  -fPIC -DPIC -o .libs/csyr2k.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o csyrk.lo csyrk.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c csyrk.c  -fPIC -DPIC -o .libs/csyrk.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctbmv.c  -fPIC -DPIC -o .libs/ctbmv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctbsv.c  -fPIC -DPIC -o .libs/ctbsv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctpmv.c  -fPIC -DPIC -o .libs/ctpmv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctpsv.c  -fPIC -DPIC -o .libs/ctpsv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctrmm.c  -fPIC -DPIC -o .libs/ctrmm.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctrmv.c  -fPIC -DPIC -o .libs/ctrmv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctrsm.c  -fPIC -DPIC -o .libs/ctrsm.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctrsv.c  -fPIC -DPIC -o .libs/ctrsv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zaxpy.c  -fPIC -DPIC -o .libs/zaxpy.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zcopy.c  -fPIC -DPIC -o .libs/zcopy.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zdotc_sub.c  -fPIC -DPIC -o .libs/zdotc_sub.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zdotu_sub.c  -fPIC -DPIC -o .libs/zdotu_sub.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zdscal.c  -fPIC -DPIC -o .libs/zdscal.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zgbmv.c  -fPIC -DPIC -o .libs/zgbmv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zgemm.c  -fPIC -DPIC -o .libs/zgemm.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zgemv.c  -fPIC -DPIC -o .libs/zgemv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zgerc.c  -fPIC -DPIC -o .libs/zgerc.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zgeru.c  -fPIC -DPIC -o .libs/zgeru.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zhbmv.c  -fPIC -DPIC -o .libs/zhbmv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zhemm.c  -fPIC -DPIC -o .libs/zhemm.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zhemv.c  -fPIC -DPIC -o .libs/zhemv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zher.c  -fPIC -DPIC -o .libs/zher.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zher2.c  -fPIC -DPIC -o .libs/zher2.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zher2k.c  -fPIC -DPIC -o .libs/zher2k.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zherk.c  -fPIC -DPIC -o .libs/zherk.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zhpmv.c  -fPIC -DPIC -o .libs/zhpmv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zhpr.c  -fPIC -DPIC -o .libs/zhpr.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zhpr2.c  -fPIC -DPIC -o .libs/zhpr2.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zscal.c  -fPIC -DPIC -o .libs/zscal.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zswap.c  -fPIC -DPIC -o .libs/zswap.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zsymm.c  -fPIC -DPIC -o .libs/zsymm.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zsyr2k.c  -fPIC -DPIC -o .libs/zsyr2k.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zsyrk.c  -fPIC -DPIC -o .libs/zsyrk.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztbmv.c  -fPIC -DPIC -o .libs/ztbmv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztbsv.c  -fPIC -DPIC -o .libs/ztbsv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztpmv.c  -fPIC -DPIC -o .libs/ztpmv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztpsv.c  -fPIC -DPIC -o .libs/ztpsv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztrmm.c  -fPIC -DPIC -o .libs/ztrmm.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztrmv.c  -fPIC -DPIC -o .libs/ztrmv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztrsm.c  -fPIC -DPIC -o .libs/ztrsm.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztrsv.c  -fPIC -DPIC -o .libs/ztrsv.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c icamax.c  -fPIC -DPIC -o .libs/icamax.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c idamax.c  -fPIC -DPIC -o .libs/idamax.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c isamax.c  -fPIC -DPIC -o .libs/isamax.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c izamax.c  -fPIC -DPIC -o .libs/izamax.o
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libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c xerbla.c  -fPIC -DPIC -o .libs/xerbla.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall -version-info 0:0:0  -L/usr/local/lib -o libgslcblas.la -rpath /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib sasum.lo saxpy.lo scasum.lo scnrm2.lo scopy.lo sdot.lo sdsdot.lo sgbmv.lo sgemm.lo sgemv.lo sger.lo snrm2.lo srot.lo srotg.lo srotm.lo srotmg.lo ssbmv.lo sscal.lo sspmv.lo sspr.lo sspr2.lo sswap.lo ssymm.lo ssymv.lo ssyr.lo ssyr2.lo ssyr2k.lo ssyrk.lo stbmv.lo stbsv.lo stpmv.lo stpsv.lo strmm.lo strmv.lo strsm.lo strsv.lo dasum.lo daxpy.lo dcopy.lo ddot.lo dgbmv.lo dgemm.lo dgemv.lo dger.lo dnrm2.lo drot.lo drotg.lo drotm.lo drotmg.lo dsbmv.lo dscal.lo dsdot.lo dspmv.lo dspr.lo dspr2.lo dswap.lo dsymm.lo dsymv.lo dsyr.lo dsyr2.lo dsyr2k.lo dsyrk.lo dtbmv.lo dtbsv.lo dtpmv.lo dtpsv.lo dtrmm.lo dtrmv.lo dtrsm.lo dtrsv.lo dzasum.lo dznrm2.lo caxpy.lo ccopy.lo cdotc_sub.lo cdotu_sub.lo cgbmv.lo cgemm.lo cgemv.lo cgerc.lo cgeru.lo chbmv.lo chemm.lo chemv.lo cher.lo cher2.lo cher2k.lo cherk.lo chpmv.lo chpr.lo chpr2.lo cscal.lo csscal.lo cswap.lo csymm.lo csyr2k.lo csyrk.lo ctbmv.lo ctbsv.lo ctpmv.lo ctpsv.lo ctrmm.lo ctrmv.lo ctrsm.lo ctrsv.lo zaxpy.lo zcopy.lo zdotc_sub.lo zdotu_sub.lo zdscal.lo zgbmv.lo zgemm.lo zgemv.lo zgerc.lo zgeru.lo zhbmv.lo zhemm.lo zhemv.lo zher.lo zher2.lo zher2k.lo zherk.lo zhpmv.lo zhpr.lo zhpr2.lo zscal.lo zswap.lo zsymm.lo zsyr2k.lo zsyrk.lo ztbmv.lo ztbsv.lo ztpmv.lo ztpsv.lo ztrmm.lo ztrmv.lo ztrsm.lo ztrsv.lo icamax.lo idamax.lo isamax.lo izamax.lo xerbla.lo  -lm 
libtool: link: gcc -shared  .libs/sasum.o .libs/saxpy.o .libs/scasum.o .libs/scnrm2.o .libs/scopy.o .libs/sdot.o .libs/sdsdot.o .libs/sgbmv.o .libs/sgemm.o .libs/sgemv.o .libs/sger.o .libs/snrm2.o .libs/srot.o .libs/srotg.o .libs/srotm.o .libs/srotmg.o .libs/ssbmv.o .libs/sscal.o .libs/sspmv.o .libs/sspr.o .libs/sspr2.o .libs/sswap.o .libs/ssymm.o .libs/ssymv.o .libs/ssyr.o .libs/ssyr2.o .libs/ssyr2k.o .libs/ssyrk.o .libs/stbmv.o .libs/stbsv.o .libs/stpmv.o .libs/stpsv.o .libs/strmm.o .libs/strmv.o .libs/strsm.o .libs/strsv.o .libs/dasum.o .libs/daxpy.o .libs/dcopy.o .libs/ddot.o .libs/dgbmv.o .libs/dgemm.o .libs/dgemv.o .libs/dger.o .libs/dnrm2.o .libs/drot.o .libs/drotg.o .libs/drotm.o .libs/drotmg.o .libs/dsbmv.o .libs/dscal.o .libs/dsdot.o .libs/dspmv.o .libs/dspr.o .libs/dspr2.o .libs/dswap.o .libs/dsymm.o .libs/dsymv.o .libs/dsyr.o .libs/dsyr2.o .libs/dsyr2k.o .libs/dsyrk.o .libs/dtbmv.o .libs/dtbsv.o .libs/dtpmv.o .libs/dtpsv.o .libs/dtrmm.o .libs/dtrmv.o .libs/dtrsm.o .libs/dtrsv.o .libs/dzasum.o .libs/dznrm2.o .libs/caxpy.o .libs/ccopy.o .libs/cdotc_sub.o .libs/cdotu_sub.o .libs/cgbmv.o .libs/cgemm.o .libs/cgemv.o .libs/cgerc.o .libs/cgeru.o .libs/chbmv.o .libs/chemm.o .libs/chemv.o .libs/cher.o .libs/cher2.o .libs/cher2k.o .libs/cherk.o .libs/chpmv.o .libs/chpr.o .libs/chpr2.o .libs/cscal.o .libs/csscal.o .libs/cswap.o .libs/csymm.o .libs/csyr2k.o .libs/csyrk.o .libs/ctbmv.o .libs/ctbsv.o .libs/ctpmv.o .libs/ctpsv.o .libs/ctrmm.o .libs/ctrmv.o .libs/ctrsm.o .libs/ctrsv.o .libs/zaxpy.o .libs/zcopy.o .libs/zdotc_sub.o .libs/zdotu_sub.o .libs/zdscal.o .libs/zgbmv.o .libs/zgemm.o .libs/zgemv.o .libs/zgerc.o .libs/zgeru.o .libs/zhbmv.o .libs/zhemm.o .libs/zhemv.o .libs/zher.o .libs/zher2.o .libs/zher2k.o .libs/zherk.o .libs/zhpmv.o .libs/zhpr.o .libs/zhpr2.o .libs/zscal.o .libs/zswap.o .libs/zsymm.o .libs/zsyr2k.o .libs/zsyrk.o .libs/ztbmv.o .libs/ztbsv.o .libs/ztpmv.o .libs/ztpsv.o .libs/ztrmm.o .libs/ztrmv.o .libs/ztrsm.o .libs/ztrsv.o .libs/icamax.o .libs/idamax.o .libs/isamax.o .libs/izamax.o .libs/xerbla.o   -L/usr/local/lib -lm    -Wl,-soname -Wl,libgslcblas.so.0 -o .libs/libgslcblas.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libgslcblas.so.0" && ln -s "libgslcblas.so.0.0.0" "libgslcblas.so.0")
libtool: link: (cd ".libs" && rm -f "libgslcblas.so" && ln -s "libgslcblas.so.0.0.0" "libgslcblas.so")
libtool: link: ( cd ".libs" && rm -f "libgslcblas.la" && ln -s "../libgslcblas.la" "libgslcblas.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/cblas'
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib"
 /bin/bash ../libtool   --mode=install /usr/bin/install -c   libgslcblas.la '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib'
libtool: install: /usr/bin/install -c .libs/libgslcblas.so.0.0.0 /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib/libgslcblas.so.0.0.0
libtool: install: (cd /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib && { ln -s -f libgslcblas.so.0.0.0 libgslcblas.so.0 || { rm -f libgslcblas.so.0 && ln -s libgslcblas.so.0.0.0 libgslcblas.so.0; }; })
libtool: install: (cd /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib && { ln -s -f libgslcblas.so.0.0.0 libgslcblas.so || { rm -f libgslcblas.so && ln -s libgslcblas.so.0.0.0 libgslcblas.so; }; })
libtool: install: /usr/bin/install -c .libs/libgslcblas.lai /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib/libgslcblas.la
libtool: finish: PATH="/usr/bin:/bin:/usr/local/bin:/snap/bin:/usr/local/root/bin:/usr/local/ensembl-vep:/sbin" ldconfig -n /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_cblas.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/cblas'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/cblas'
Making install in specfunc
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/specfunc'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o airy.lo airy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c airy.c  -fPIC -DPIC -o .libs/airy.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o airy_der.lo airy_der.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c airy_der.c  -fPIC -DPIC -o .libs/airy_der.o
airy_der.c: In function 'airy_deriv_mod_phase':
airy_der.c:595:10: warning: variable 'x32' set but not used [-Wunused-but-set-variable]
   double x32;
          ^~~
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o airy_zero.lo airy_zero.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c airy_zero.c  -fPIC -DPIC -o .libs/airy_zero.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o atanint.lo atanint.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c atanint.c  -fPIC -DPIC -o .libs/atanint.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel.lo bessel.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel.c  -fPIC -DPIC -o .libs/bessel.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_I0.lo bessel_I0.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_I0.c  -fPIC -DPIC -o .libs/bessel_I0.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_I1.lo bessel_I1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_I1.c  -fPIC -DPIC -o .libs/bessel_I1.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_In.lo bessel_In.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_In.c  -fPIC -DPIC -o .libs/bessel_In.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_Inu.lo bessel_Inu.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Inu.c  -fPIC -DPIC -o .libs/bessel_Inu.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_J0.lo bessel_J0.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_J0.c  -fPIC -DPIC -o .libs/bessel_J0.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_J1.lo bessel_J1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_J1.c  -fPIC -DPIC -o .libs/bessel_J1.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_Jn.lo bessel_Jn.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Jn.c  -fPIC -DPIC -o .libs/bessel_Jn.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_Jnu.lo bessel_Jnu.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Jnu.c  -fPIC -DPIC -o .libs/bessel_Jnu.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_K0.lo bessel_K0.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_K0.c  -fPIC -DPIC -o .libs/bessel_K0.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_K1.lo bessel_K1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_K1.c  -fPIC -DPIC -o .libs/bessel_K1.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_Kn.lo bessel_Kn.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Kn.c  -fPIC -DPIC -o .libs/bessel_Kn.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_Knu.lo bessel_Knu.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Knu.c  -fPIC -DPIC -o .libs/bessel_Knu.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_Y0.lo bessel_Y0.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Y0.c  -fPIC -DPIC -o .libs/bessel_Y0.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_Y1.lo bessel_Y1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Y1.c  -fPIC -DPIC -o .libs/bessel_Y1.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_Yn.lo bessel_Yn.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Yn.c  -fPIC -DPIC -o .libs/bessel_Yn.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_Ynu.lo bessel_Ynu.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Ynu.c  -fPIC -DPIC -o .libs/bessel_Ynu.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_amp_phase.lo bessel_amp_phase.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_amp_phase.c  -fPIC -DPIC -o .libs/bessel_amp_phase.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_i.lo bessel_i.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_i.c  -fPIC -DPIC -o .libs/bessel_i.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_j.lo bessel_j.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_j.c  -fPIC -DPIC -o .libs/bessel_j.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_k.lo bessel_k.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_k.c  -fPIC -DPIC -o .libs/bessel_k.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_olver.lo bessel_olver.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_olver.c  -fPIC -DPIC -o .libs/bessel_olver.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_temme.lo bessel_temme.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_temme.c  -fPIC -DPIC -o .libs/bessel_temme.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_y.lo bessel_y.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_y.c  -fPIC -DPIC -o .libs/bessel_y.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_zero.lo bessel_zero.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_zero.c  -fPIC -DPIC -o .libs/bessel_zero.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bessel_sequence.lo bessel_sequence.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_sequence.c  -fPIC -DPIC -o .libs/bessel_sequence.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o beta.lo beta.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c beta.c  -fPIC -DPIC -o .libs/beta.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o beta_inc.lo beta_inc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c beta_inc.c  -fPIC -DPIC -o .libs/beta_inc.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o clausen.lo clausen.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c clausen.c  -fPIC -DPIC -o .libs/clausen.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o coulomb.lo coulomb.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c coulomb.c  -fPIC -DPIC -o .libs/coulomb.o
coulomb.c: In function 'gsl_sf_coulomb_wave_FG_e':
coulomb.c:1061:9: warning: variable 'stat_CF1_lam_G' set but not used [-Wunused-but-set-variable]
     int stat_CF1_lam_G;
         ^~~~~~~~~~~~~~
coulomb.c:1131:23: warning: variable 'Fp_lam_min' set but not used [-Wunused-but-set-variable]
     double F_lam_min, Fp_lam_min;
                       ^~~~~~~~~~
coulomb.c:994:15: warning: 'G_lam_G' may be used uninitialized in this function [-Wmaybe-uninitialized]
       G->val  = G_lam_G;
       ~~~~~~~~^~~~~~~~~
coulomb.c:996:15: warning: 'Gp_lam_G' may be used uninitialized in this function [-Wmaybe-uninitialized]
       Gp->val = Gp_lam_G;
       ~~~~~~~~^~~~~~~~~~
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o coupling.lo coupling.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c coupling.c  -fPIC -DPIC -o .libs/coupling.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o coulomb_bound.lo coulomb_bound.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c coulomb_bound.c  -fPIC -DPIC -o .libs/coulomb_bound.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dawson.lo dawson.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dawson.c  -fPIC -DPIC -o .libs/dawson.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o debye.lo debye.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c debye.c  -fPIC -DPIC -o .libs/debye.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o dilog.lo dilog.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dilog.c  -fPIC -DPIC -o .libs/dilog.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o elementary.lo elementary.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c elementary.c  -fPIC -DPIC -o .libs/elementary.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ellint.lo ellint.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ellint.c  -fPIC -DPIC -o .libs/ellint.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o elljac.lo elljac.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c elljac.c  -fPIC -DPIC -o .libs/elljac.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o erfc.lo erfc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c erfc.c  -fPIC -DPIC -o .libs/erfc.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o exp.lo exp.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exp.c  -fPIC -DPIC -o .libs/exp.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o expint.lo expint.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c expint.c  -fPIC -DPIC -o .libs/expint.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o expint3.lo expint3.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c expint3.c  -fPIC -DPIC -o .libs/expint3.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o fermi_dirac.lo fermi_dirac.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fermi_dirac.c  -fPIC -DPIC -o .libs/fermi_dirac.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gegenbauer.lo gegenbauer.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gegenbauer.c  -fPIC -DPIC -o .libs/gegenbauer.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gamma.lo gamma.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gamma.c  -fPIC -DPIC -o .libs/gamma.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gamma_inc.lo gamma_inc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gamma_inc.c  -fPIC -DPIC -o .libs/gamma_inc.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hyperg_0F1.lo hyperg_0F1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg_0F1.c  -fPIC -DPIC -o .libs/hyperg_0F1.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hyperg_2F0.lo hyperg_2F0.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg_2F0.c  -fPIC -DPIC -o .libs/hyperg_2F0.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hyperg_1F1.lo hyperg_1F1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg_1F1.c  -fPIC -DPIC -o .libs/hyperg_1F1.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hyperg_2F1.lo hyperg_2F1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg_2F1.c  -fPIC -DPIC -o .libs/hyperg_2F1.o
hyperg_2F1.c: In function 'hyperg_2F1_reflect':
hyperg_2F1.c:373:9: warning: variable 'stat_c' set but not used [-Wunused-but-set-variable]
     int stat_c;
         ^~~~~~
hyperg_2F1.c:523:20: warning: variable 'status_F2' set but not used [-Wunused-but-set-variable]
     int status_F1, status_F2;
                    ^~~~~~~~~
hyperg_2F1.c:523:9: warning: variable 'status_F1' set but not used [-Wunused-but-set-variable]
     int status_F1, status_F2;
         ^~~~~~~~~
hyperg_2F1.c: In function 'gsl_sf_hyperg_2F1_e':
hyperg_2F1.c:721:12: warning: variable 'ap' set but not used [-Wunused-but-set-variable]
     double ap, bp;
            ^~
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hyperg_U.lo hyperg_U.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg_U.c  -fPIC -DPIC -o .libs/hyperg_U.o
hyperg_U.c: In function 'hyperg_U_finite_sum':
hyperg_U.c:301:11: warning: variable 'stat_gamr' set but not used [-Wunused-but-set-variable]
       int stat_gamr;
           ^~~~~~~~~
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hyperg.lo hyperg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg.c  -fPIC -DPIC -o .libs/hyperg.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o laguerre.lo laguerre.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c laguerre.c  -fPIC -DPIC -o .libs/laguerre.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o lambert.lo lambert.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lambert.c  -fPIC -DPIC -o .libs/lambert.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o legendre_H3d.lo legendre_H3d.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c legendre_H3d.c  -fPIC -DPIC -o .libs/legendre_H3d.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o legendre_Qn.lo legendre_Qn.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c legendre_Qn.c  -fPIC -DPIC -o .libs/legendre_Qn.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o legendre_con.lo legendre_con.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c legendre_con.c  -fPIC -DPIC -o .libs/legendre_con.o
legendre_con.c: In function 'gsl_sf_conicalP_1_e':
legendre_con.c:875:17: warning: variable 'stat_E' set but not used [-Wunused-but-set-variable]
     int stat_K, stat_E;
                 ^~~~~~
At top level:
legendre_con.c:181:21: warning: 'U3c5' defined but not used [-Wunused-const-variable=]
 static const double U3c5[] = {       9136.0,      22480.0,     12760.0,
                     ^~~~
legendre_con.c:178:21: warning: 'U3c4' defined but not used [-Wunused-const-variable=]
 static const double U3c4[] = {    2696.0,    -16740.0,   -524250.0,  -183975.0,
                     ^~~~
legendre_con.c:176:21: warning: 'U3c3' defined but not used [-Wunused-const-variable=]
 static const double U3c3[] = {  -29748.0,   -8840.0, 1725295.0, 1767025.0,
                     ^~~~
legendre_con.c:174:21: warning: 'U3c2' defined but not used [-Wunused-const-variable=]
 static const double U3c2[] = {   29366.0,   35835.0, -252360.0, -272630.0,
                     ^~~~
legendre_con.c:173:21: warning: 'U3c1' defined but not used [-Wunused-const-variable=]
 static const double U3c1[] = {   -1307.0,   -1647.0,    3375.0,    3675.0 };
                     ^~~~
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o legendre_poly.lo legendre_poly.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c legendre_poly.c  -fPIC -DPIC -o .libs/legendre_poly.o
legendre_poly.c: In function 'gsl_sf_legendre_sphPlm_e':
legendre_poly.c:588:32: warning: 'y_ell_err' may be used uninitialized in this function [-Wmaybe-uninitialized]
       result->err  = y_ell_err + (0.5*(l-m) + 1.0) * GSL_DBL_EPSILON * fabs(y_ell);
                      ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o log.lo log.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c log.c  -fPIC -DPIC -o .libs/log.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o mathieu_angfunc.lo mathieu_angfunc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mathieu_angfunc.c  -fPIC -DPIC -o .libs/mathieu_angfunc.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o mathieu_charv.lo mathieu_charv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mathieu_charv.c  -fPIC -DPIC -o .libs/mathieu_charv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o mathieu_coeff.lo mathieu_coeff.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mathieu_coeff.c  -fPIC -DPIC -o .libs/mathieu_coeff.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o mathieu_radfunc.lo mathieu_radfunc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mathieu_radfunc.c  -fPIC -DPIC -o .libs/mathieu_radfunc.o
mathieu_radfunc.c: In function 'gsl_sf_mathieu_Mc':
mathieu_radfunc.c:33:21: warning: variable 'mm' set but not used [-Wunused-but-set-variable]
   int even_odd, kk, mm, status;
                     ^~
mathieu_radfunc.c: In function 'gsl_sf_mathieu_Ms':
mathieu_radfunc.c:139:21: warning: variable 'mm' set but not used [-Wunused-but-set-variable]
   int even_odd, kk, mm, status;
                     ^~
mathieu_radfunc.c: In function 'gsl_sf_mathieu_Mc_array':
mathieu_radfunc.c:250:32: warning: variable 'mm' set but not used [-Wunused-but-set-variable]
   int even_odd, order, ii, kk, mm, status;
                                ^~
mathieu_radfunc.c: In function 'gsl_sf_mathieu_Ms_array':
mathieu_radfunc.c:356:32: warning: variable 'mm' set but not used [-Wunused-but-set-variable]
   int even_odd, order, ii, kk, mm, status;
                                ^~
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o mathieu_workspace.lo mathieu_workspace.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mathieu_workspace.c  -fPIC -DPIC -o .libs/mathieu_workspace.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o poch.lo poch.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c poch.c  -fPIC -DPIC -o .libs/poch.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o pow_int.lo pow_int.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c pow_int.c  -fPIC -DPIC -o .libs/pow_int.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o psi.lo psi.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c psi.c  -fPIC -DPIC -o .libs/psi.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o result.lo result.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c result.c  -fPIC -DPIC -o .libs/result.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o shint.lo shint.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c shint.c  -fPIC -DPIC -o .libs/shint.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sinint.lo sinint.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sinint.c  -fPIC -DPIC -o .libs/sinint.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o synchrotron.lo synchrotron.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c synchrotron.c  -fPIC -DPIC -o .libs/synchrotron.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o transport.lo transport.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c transport.c  -fPIC -DPIC -o .libs/transport.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o trig.lo trig.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c trig.c  -fPIC -DPIC -o .libs/trig.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o zeta.lo zeta.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zeta.c  -fPIC -DPIC -o .libs/zeta.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslspecfunc.la  airy.lo airy_der.lo airy_zero.lo atanint.lo bessel.lo bessel_I0.lo bessel_I1.lo bessel_In.lo bessel_Inu.lo bessel_J0.lo bessel_J1.lo bessel_Jn.lo bessel_Jnu.lo bessel_K0.lo bessel_K1.lo bessel_Kn.lo bessel_Knu.lo bessel_Y0.lo bessel_Y1.lo bessel_Yn.lo bessel_Ynu.lo bessel_amp_phase.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_olver.lo bessel_temme.lo bessel_y.lo bessel_zero.lo bessel_sequence.lo beta.lo beta_inc.lo clausen.lo coulomb.lo coupling.lo coulomb_bound.lo dawson.lo debye.lo dilog.lo elementary.lo ellint.lo elljac.lo erfc.lo exp.lo expint.lo expint3.lo fermi_dirac.lo gegenbauer.lo gamma.lo gamma_inc.lo hyperg_0F1.lo hyperg_2F0.lo hyperg_1F1.lo hyperg_2F1.lo hyperg_U.lo hyperg.lo laguerre.lo lambert.lo legendre_H3d.lo legendre_Qn.lo legendre_con.lo legendre_poly.lo log.lo mathieu_angfunc.lo mathieu_charv.lo mathieu_coeff.lo mathieu_radfunc.lo mathieu_workspace.lo poch.lo pow_int.lo psi.lo result.lo shint.lo sinint.lo synchrotron.lo transport.lo trig.lo zeta.lo  -lm 
libtool: link: ar cru .libs/libgslspecfunc.a .libs/airy.o .libs/airy_der.o .libs/airy_zero.o .libs/atanint.o .libs/bessel.o .libs/bessel_I0.o .libs/bessel_I1.o .libs/bessel_In.o .libs/bessel_Inu.o .libs/bessel_J0.o .libs/bessel_J1.o .libs/bessel_Jn.o .libs/bessel_Jnu.o .libs/bessel_K0.o .libs/bessel_K1.o .libs/bessel_Kn.o .libs/bessel_Knu.o .libs/bessel_Y0.o .libs/bessel_Y1.o .libs/bessel_Yn.o .libs/bessel_Ynu.o .libs/bessel_amp_phase.o .libs/bessel_i.o .libs/bessel_j.o .libs/bessel_k.o .libs/bessel_olver.o .libs/bessel_temme.o .libs/bessel_y.o .libs/bessel_zero.o .libs/bessel_sequence.o .libs/beta.o .libs/beta_inc.o .libs/clausen.o .libs/coulomb.o .libs/coupling.o .libs/coulomb_bound.o .libs/dawson.o .libs/debye.o .libs/dilog.o .libs/elementary.o .libs/ellint.o .libs/elljac.o .libs/erfc.o .libs/exp.o .libs/expint.o .libs/expint3.o .libs/fermi_dirac.o .libs/gegenbauer.o .libs/gamma.o .libs/gamma_inc.o .libs/hyperg_0F1.o .libs/hyperg_2F0.o .libs/hyperg_1F1.o .libs/hyperg_2F1.o .libs/hyperg_U.o .libs/hyperg.o .libs/laguerre.o .libs/lambert.o .libs/legendre_H3d.o .libs/legendre_Qn.o .libs/legendre_con.o .libs/legendre_poly.o .libs/log.o .libs/mathieu_angfunc.o .libs/mathieu_charv.o .libs/mathieu_coeff.o .libs/mathieu_radfunc.o .libs/mathieu_workspace.o .libs/poch.o .libs/pow_int.o .libs/psi.o .libs/result.o .libs/shint.o .libs/sinint.o .libs/synchrotron.o .libs/transport.o .libs/trig.o .libs/zeta.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslspecfunc.a
libtool: link: ( cd ".libs" && rm -f "libgslspecfunc.la" && ln -s "../libgslspecfunc.la" "libgslspecfunc.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/specfunc'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_sf.h gsl_sf_airy.h gsl_sf_bessel.h gsl_sf_clausen.h gsl_sf_coulomb.h gsl_sf_coupling.h gsl_sf_dawson.h gsl_sf_debye.h gsl_sf_dilog.h gsl_sf_elementary.h gsl_sf_ellint.h gsl_sf_elljac.h gsl_sf_erf.h gsl_sf_exp.h gsl_sf_expint.h gsl_sf_fermi_dirac.h gsl_sf_gamma.h gsl_sf_gegenbauer.h gsl_sf_hyperg.h gsl_sf_laguerre.h gsl_sf_lambert.h gsl_sf_legendre.h gsl_sf_log.h gsl_sf_mathieu.h gsl_sf_pow_int.h gsl_sf_psi.h gsl_sf_result.h gsl_sf_synchrotron.h gsl_sf_transport.h gsl_sf_trig.h gsl_sf_zeta.h gsl_specfunc.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/specfunc'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/specfunc'
Making install in linalg
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/linalg'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o multiply.lo multiply.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c multiply.c  -fPIC -DPIC -o .libs/multiply.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o exponential.lo exponential.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exponential.c  -fPIC -DPIC -o .libs/exponential.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o tridiag.lo tridiag.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c tridiag.c  -fPIC -DPIC -o .libs/tridiag.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o lu.lo lu.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lu.c  -fPIC -DPIC -o .libs/lu.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o luc.lo luc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c luc.c  -fPIC -DPIC -o .libs/luc.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hh.lo hh.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hh.c  -fPIC -DPIC -o .libs/hh.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o qr.lo qr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c qr.c  -fPIC -DPIC -o .libs/qr.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o qrpt.lo qrpt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c qrpt.c  -fPIC -DPIC -o .libs/qrpt.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o lq.lo lq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lq.c  -fPIC -DPIC -o .libs/lq.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ptlq.lo ptlq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ptlq.c  -fPIC -DPIC -o .libs/ptlq.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o svd.lo svd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c svd.c  -fPIC -DPIC -o .libs/svd.o
In file included from svd.c:31:0:
svdstep.c: In function 'qrstep':
svdstep.c:379:34: warning: variable 'bq' set but not used [-Wunused-but-set-variable]
   double ak, bk, zk, ap, bp, aq, bq;
                                  ^~
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o householder.lo householder.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c householder.c  -fPIC -DPIC -o .libs/householder.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o householdercomplex.lo householdercomplex.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c householdercomplex.c  -fPIC -DPIC -o .libs/householdercomplex.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hessenberg.lo hessenberg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hessenberg.c  -fPIC -DPIC -o .libs/hessenberg.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hesstri.lo hesstri.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hesstri.c  -fPIC -DPIC -o .libs/hesstri.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o cholesky.lo cholesky.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cholesky.c  -fPIC -DPIC -o .libs/cholesky.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o choleskyc.lo choleskyc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c choleskyc.c  -fPIC -DPIC -o .libs/choleskyc.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o symmtd.lo symmtd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c symmtd.c  -fPIC -DPIC -o .libs/symmtd.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hermtd.lo hermtd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hermtd.c  -fPIC -DPIC -o .libs/hermtd.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bidiag.lo bidiag.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bidiag.c  -fPIC -DPIC -o .libs/bidiag.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o balance.lo balance.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c balance.c  -fPIC -DPIC -o .libs/balance.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o balancemat.lo balancemat.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c balancemat.c  -fPIC -DPIC -o .libs/balancemat.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgsllinalg.la  multiply.lo exponential.lo tridiag.lo lu.lo luc.lo hh.lo qr.lo qrpt.lo lq.lo ptlq.lo svd.lo householder.lo householdercomplex.lo hessenberg.lo hesstri.lo cholesky.lo choleskyc.lo symmtd.lo hermtd.lo bidiag.lo balance.lo balancemat.lo  -lm 
libtool: link: ar cru .libs/libgsllinalg.a .libs/multiply.o .libs/exponential.o .libs/tridiag.o .libs/lu.o .libs/luc.o .libs/hh.o .libs/qr.o .libs/qrpt.o .libs/lq.o .libs/ptlq.o .libs/svd.o .libs/householder.o .libs/householdercomplex.o .libs/hessenberg.o .libs/hesstri.o .libs/cholesky.o .libs/choleskyc.o .libs/symmtd.o .libs/hermtd.o .libs/bidiag.o .libs/balance.o .libs/balancemat.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgsllinalg.a
libtool: link: ( cd ".libs" && rm -f "libgsllinalg.la" && ln -s "../libgsllinalg.la" "libgsllinalg.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/linalg'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_linalg.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/linalg'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/linalg'
Making install in statistics
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/statistics'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o mean.lo mean.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mean.c  -fPIC -DPIC -o .libs/mean.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o variance.lo variance.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c variance.c  -fPIC -DPIC -o .libs/variance.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o absdev.lo absdev.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c absdev.c  -fPIC -DPIC -o .libs/absdev.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o skew.lo skew.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c skew.c  -fPIC -DPIC -o .libs/skew.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o kurtosis.lo kurtosis.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c kurtosis.c  -fPIC -DPIC -o .libs/kurtosis.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o lag1.lo lag1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lag1.c  -fPIC -DPIC -o .libs/lag1.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o p_variance.lo p_variance.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c p_variance.c  -fPIC -DPIC -o .libs/p_variance.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o minmax.lo minmax.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c minmax.c  -fPIC -DPIC -o .libs/minmax.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ttest.lo ttest.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ttest.c  -fPIC -DPIC -o .libs/ttest.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o median.lo median.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c median.c  -fPIC -DPIC -o .libs/median.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o covariance.lo covariance.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c covariance.c  -fPIC -DPIC -o .libs/covariance.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o quantiles.lo quantiles.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c quantiles.c  -fPIC -DPIC -o .libs/quantiles.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o wmean.lo wmean.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c wmean.c  -fPIC -DPIC -o .libs/wmean.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o wvariance.lo wvariance.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c wvariance.c  -fPIC -DPIC -o .libs/wvariance.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o wabsdev.lo wabsdev.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c wabsdev.c  -fPIC -DPIC -o .libs/wabsdev.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o wskew.lo wskew.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c wskew.c  -fPIC -DPIC -o .libs/wskew.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o wkurtosis.lo wkurtosis.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c wkurtosis.c  -fPIC -DPIC -o .libs/wkurtosis.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslstatistics.la  mean.lo variance.lo absdev.lo skew.lo kurtosis.lo lag1.lo p_variance.lo minmax.lo ttest.lo median.lo covariance.lo quantiles.lo wmean.lo wvariance.lo wabsdev.lo wskew.lo wkurtosis.lo  -lm 
libtool: link: ar cru .libs/libgslstatistics.a .libs/mean.o .libs/variance.o .libs/absdev.o .libs/skew.o .libs/kurtosis.o .libs/lag1.o .libs/p_variance.o .libs/minmax.o .libs/ttest.o .libs/median.o .libs/covariance.o .libs/quantiles.o .libs/wmean.o .libs/wvariance.o .libs/wabsdev.o .libs/wskew.o .libs/wkurtosis.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslstatistics.a
libtool: link: ( cd ".libs" && rm -f "libgslstatistics.la" && ln -s "../libgslstatistics.la" "libgslstatistics.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/statistics'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
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make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/statistics'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/statistics'
Making install in blas
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/blas'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o blas.lo blas.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c blas.c  -fPIC -DPIC -o .libs/blas.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslblas.la  blas.lo  -lm 
libtool: link: ar cru .libs/libgslblas.a .libs/blas.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslblas.a
libtool: link: ( cd ".libs" && rm -f "libgslblas.la" && ln -s "../libgslblas.la" "libgslblas.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/blas'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
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make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/blas'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/blas'
Making install in roots
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/roots'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bisection.lo bisection.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bisection.c  -fPIC -DPIC -o .libs/bisection.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o brent.lo brent.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c brent.c  -fPIC -DPIC -o .libs/brent.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o falsepos.lo falsepos.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c falsepos.c  -fPIC -DPIC -o .libs/falsepos.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o newton.lo newton.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c newton.c  -fPIC -DPIC -o .libs/newton.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o secant.lo secant.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c secant.c  -fPIC -DPIC -o .libs/secant.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o steffenson.lo steffenson.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c steffenson.c  -fPIC -DPIC -o .libs/steffenson.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o convergence.lo convergence.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c convergence.c  -fPIC -DPIC -o .libs/convergence.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o fsolver.lo fsolver.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fsolver.c  -fPIC -DPIC -o .libs/fsolver.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o fdfsolver.lo fdfsolver.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fdfsolver.c  -fPIC -DPIC -o .libs/fdfsolver.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslroots.la  bisection.lo brent.lo falsepos.lo newton.lo secant.lo steffenson.lo convergence.lo fsolver.lo fdfsolver.lo  -lm 
libtool: link: ar cru .libs/libgslroots.a .libs/bisection.o .libs/brent.o .libs/falsepos.o .libs/newton.o .libs/secant.o .libs/steffenson.o .libs/convergence.o .libs/fsolver.o .libs/fdfsolver.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslroots.a
libtool: link: ( cd ".libs" && rm -f "libgslroots.la" && ln -s "../libgslroots.la" "libgslroots.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/roots'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_roots.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/roots'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/roots'
Making install in err
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/err'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/local/include  -g -O2 -Wall -c -o error.lo error.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -g -O2 -Wall -c error.c  -fPIC -DPIC -o .libs/error.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/local/include  -g -O2 -Wall -c -o stream.lo stream.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -g -O2 -Wall -c stream.c  -fPIC -DPIC -o .libs/stream.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/local/include  -g -O2 -Wall -c -o message.lo message.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -g -O2 -Wall -c message.c  -fPIC -DPIC -o .libs/message.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/local/include  -g -O2 -Wall -c -o strerror.lo strerror.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -g -O2 -Wall -c strerror.c  -fPIC -DPIC -o .libs/strerror.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslerr.la  error.lo stream.lo message.lo strerror.lo  -lm 
libtool: link: ar cru .libs/libgslerr.a .libs/error.o .libs/stream.o .libs/message.o .libs/strerror.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslerr.a
libtool: link: ( cd ".libs" && rm -f "libgslerr.la" && ln -s "../libgslerr.la" "libgslerr.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/err'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_errno.h gsl_message.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/err'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/err'
Making install in min
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/min'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o fsolver.lo fsolver.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fsolver.c  -fPIC -DPIC -o .libs/fsolver.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o golden.lo golden.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c golden.c  -fPIC -DPIC -o .libs/golden.o
golden.c: In function 'goldensection_init':
golden.c:49:27: warning: variable 'state' set but not used [-Wunused-but-set-variable]
   goldensection_state_t * state = (goldensection_state_t *) vstate;
                           ^~~~~
golden.c: In function 'goldensection_iterate':
golden.c:68:27: warning: variable 'state' set but not used [-Wunused-but-set-variable]
   goldensection_state_t * state = (goldensection_state_t *) vstate;
                           ^~~~~
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o brent.lo brent.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c brent.c  -fPIC -DPIC -o .libs/brent.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o convergence.lo convergence.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c convergence.c  -fPIC -DPIC -o .libs/convergence.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o bracketing.lo bracketing.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bracketing.c  -fPIC -DPIC -o .libs/bracketing.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o quad_golden.lo quad_golden.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c quad_golden.c  -fPIC -DPIC -o .libs/quad_golden.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslmin.la  fsolver.lo golden.lo brent.lo convergence.lo bracketing.lo quad_golden.lo  -lm 
libtool: link: ar cru .libs/libgslmin.a .libs/fsolver.o .libs/golden.o .libs/brent.o .libs/convergence.o .libs/bracketing.o .libs/quad_golden.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslmin.a
libtool: link: ( cd ".libs" && rm -f "libgslmin.la" && ln -s "../libgslmin.la" "libgslmin.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/min'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_min.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/min'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/min'
Making install in permutation
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/permutation'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o init.lo init.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c init.c  -fPIC -DPIC -o .libs/init.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o file.lo file.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c file.c  -fPIC -DPIC -o .libs/file.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o permutation.lo permutation.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c permutation.c  -fPIC -DPIC -o .libs/permutation.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o permute.lo permute.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c permute.c  -fPIC -DPIC -o .libs/permute.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o canonical.lo canonical.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c canonical.c  -fPIC -DPIC -o .libs/canonical.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o inline.lo inline.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c inline.c  -fPIC -DPIC -o .libs/inline.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslpermutation.la  init.lo file.lo permutation.lo permute.lo canonical.lo inline.lo  -lm 
libtool: link: ar cru .libs/libgslpermutation.a .libs/init.o .libs/file.o .libs/permutation.o .libs/permute.o .libs/canonical.o .libs/inline.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslpermutation.a
libtool: link: ( cd ".libs" && rm -f "libgslpermutation.la" && ln -s "../libgslpermutation.la" "libgslpermutation.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/permutation'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_permutation.h gsl_permute.h gsl_permute_char.h gsl_permute_complex_double.h gsl_permute_complex_float.h gsl_permute_complex_long_double.h gsl_permute_double.h gsl_permute_float.h gsl_permute_int.h gsl_permute_long.h gsl_permute_long_double.h gsl_permute_short.h gsl_permute_uchar.h gsl_permute_uint.h gsl_permute_ulong.h gsl_permute_ushort.h gsl_permute_vector.h gsl_permute_vector_char.h gsl_permute_vector_complex_double.h gsl_permute_vector_complex_float.h gsl_permute_vector_complex_long_double.h gsl_permute_vector_double.h gsl_permute_vector_float.h gsl_permute_vector_int.h gsl_permute_vector_long.h gsl_permute_vector_long_double.h gsl_permute_vector_short.h gsl_permute_vector_uchar.h gsl_permute_vector_uint.h gsl_permute_vector_ulong.h gsl_permute_vector_ushort.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/permutation'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/permutation'
Making install in complex
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/complex'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o math.lo math.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c math.c  -fPIC -DPIC -o .libs/math.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o inline.lo inline.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c inline.c  -fPIC -DPIC -o .libs/inline.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslcomplex.la  math.lo inline.lo  -lm 
libtool: link: ar cru .libs/libgslcomplex.a .libs/math.o .libs/inline.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslcomplex.a
libtool: link: ( cd ".libs" && rm -f "libgslcomplex.la" && ln -s "../libgslcomplex.la" "libgslcomplex.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/complex'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_complex.h gsl_complex_math.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/complex'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/complex'
Making install in sys
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/sys'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o minmax.lo minmax.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c minmax.c  -fPIC -DPIC -o .libs/minmax.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o prec.lo prec.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c prec.c  -fPIC -DPIC -o .libs/prec.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hypot.lo hypot.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hypot.c  -fPIC -DPIC -o .libs/hypot.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o log1p.lo log1p.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c log1p.c  -fPIC -DPIC -o .libs/log1p.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o expm1.lo expm1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c expm1.c  -fPIC -DPIC -o .libs/expm1.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o coerce.lo coerce.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c coerce.c  -fPIC -DPIC -o .libs/coerce.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o invhyp.lo invhyp.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c invhyp.c  -fPIC -DPIC -o .libs/invhyp.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o pow_int.lo pow_int.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c pow_int.c  -fPIC -DPIC -o .libs/pow_int.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o infnan.lo infnan.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c infnan.c  -fPIC -DPIC -o .libs/infnan.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o fdiv.lo fdiv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fdiv.c  -fPIC -DPIC -o .libs/fdiv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o fcmp.lo fcmp.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fcmp.c  -fPIC -DPIC -o .libs/fcmp.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o ldfrexp.lo ldfrexp.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ldfrexp.c  -fPIC -DPIC -o .libs/ldfrexp.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgslsys.la  minmax.lo prec.lo hypot.lo log1p.lo expm1.lo coerce.lo invhyp.lo pow_int.lo infnan.lo fdiv.lo fcmp.lo ldfrexp.lo  -lm 
libtool: link: ar cru .libs/libgslsys.a .libs/minmax.o .libs/prec.o .libs/hypot.o .libs/log1p.o .libs/expm1.o .libs/coerce.o .libs/invhyp.o .libs/pow_int.o .libs/infnan.o .libs/fdiv.o .libs/fcmp.o .libs/ldfrexp.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgslsys.a
libtool: link: ( cd ".libs" && rm -f "libgslsys.la" && ln -s "../libgslsys.la" "libgslsys.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/sys'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_sys.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/sys'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/sys'
Making install in eigen
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/eigen'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o jacobi.lo jacobi.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c jacobi.c  -fPIC -DPIC -o .libs/jacobi.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o symm.lo symm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c symm.c  -fPIC -DPIC -o .libs/symm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o symmv.lo symmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c symmv.c  -fPIC -DPIC -o .libs/symmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o nonsymm.lo nonsymm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c nonsymm.c  -fPIC -DPIC -o .libs/nonsymm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o nonsymmv.lo nonsymmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c nonsymmv.c  -fPIC -DPIC -o .libs/nonsymmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o herm.lo herm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c herm.c  -fPIC -DPIC -o .libs/herm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o hermv.lo hermv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hermv.c  -fPIC -DPIC -o .libs/hermv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gensymm.lo gensymm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gensymm.c  -fPIC -DPIC -o .libs/gensymm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gensymmv.lo gensymmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gensymmv.c  -fPIC -DPIC -o .libs/gensymmv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o genherm.lo genherm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c genherm.c  -fPIC -DPIC -o .libs/genherm.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o genhermv.lo genhermv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c genhermv.c  -fPIC -DPIC -o .libs/genhermv.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o gen.lo gen.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gen.c  -fPIC -DPIC -o .libs/gen.o
gen.c: In function 'gen_schur_standardize1':
gen.c:1558:10: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
   size_t top;
          ^~~
gen.c: In function 'gen_schur_standardize2':
gen.c:1638:10: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
   size_t top;
          ^~~
gen.c: In function 'gen_schur_decomp':
gen.c:1418:12: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
       xv = gsl_matrix_subcolumn(w->H, top + N - 1, 0, top + N);
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gen.c:1403:10: note: 'top' was declared here
   size_t top;
          ^~~
gen.c:1299:13: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
   size_t j, top;
             ^~~
gen.c:1250:12: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
       yv = gsl_matrix_subrow(w->H, top + j + 1, top, w->size - top);
            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gen.c:1232:13: note: 'top' was declared here
   size_t j, top;
             ^~~
gen.c:609:10: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
   size_t top;
          ^~~
gen.c:1213:11: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
       m = gsl_matrix_submatrix(w->Z, 0, top + N - 2, w->size, 2);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gen.c:829:10: note: 'top' was declared here
   size_t top;             /* location of H in original matrix */
          ^~~
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o genv.lo genv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c genv.c  -fPIC -DPIC -o .libs/genv.o
genv.c: In function 'genv_get_right_eigenvectors':
genv.c:343:27: warning: '*((void *)&re2+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   gsl_vector_view re, im, re2, im2;
                           ^~~
genv.c:343:27: warning: '*((void *)&re2+16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
genv.c:343:32: warning: '*((void *)&im2+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
   gsl_vector_view re, im, re2, im2;
                                ^~~
genv.c:343:32: warning: '*((void *)&im2+16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o sort.lo sort.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sort.c  -fPIC -DPIC -o .libs/sort.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o francis.lo francis.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c francis.c  -fPIC -DPIC -o .libs/francis.o
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I..  -I/usr/local/include  -g -O2 -Wall -c -o schur.lo schur.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c schur.c  -fPIC -DPIC -o .libs/schur.o
/bin/bash ../libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o libgsleigen.la  jacobi.lo symm.lo symmv.lo nonsymm.lo nonsymmv.lo herm.lo hermv.lo gensymm.lo gensymmv.lo genherm.lo genhermv.lo gen.lo genv.lo sort.lo francis.lo schur.lo  -lm 
libtool: link: ar cru .libs/libgsleigen.a .libs/jacobi.o .libs/symm.o .libs/symmv.o .libs/nonsymm.o .libs/nonsymmv.o .libs/herm.o .libs/hermv.o .libs/gensymm.o .libs/gensymmv.o .libs/genherm.o .libs/genhermv.o .libs/gen.o .libs/genv.o .libs/sort.o .libs/francis.o .libs/schur.o 
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libgsleigen.a
libtool: link: ( cd ".libs" && rm -f "libgsleigen.la" && ln -s "../libgsleigen.la" "libgsleigen.la" )
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/eigen'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_eigen.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/eigen'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/eigen'
make[1]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13'
/bin/bash ./libtool --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/usr/local/include  -g -O2 -Wall -c -o version.lo version.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/usr/local/include -g -O2 -Wall -c version.c  -fPIC -DPIC -o .libs/version.o
/bin/bash ./libtool --tag=CC   --mode=link gcc  -g -O2 -Wall -version-info 14:0:14  -L/usr/local/lib -o libgsl.la -rpath /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib version.lo block/libgslblock.la matrix/libgslmatrix.la vector/libgslvector.la rng/libgslrng.la randist/libgslrandist.la cdf/libgslcdf.la cblas/libgslcblas.la specfunc/libgslspecfunc.la linalg/libgsllinalg.la statistics/libgslstatistics.la blas/libgslblas.la roots/libgslroots.la err/libgslerr.la min/libgslmin.la permutation/libgslpermutation.la complex/libgslcomplex.la sys/libgslsys.la eigen/libgsleigen.la  -lm 
libtool: link: gcc -shared  .libs/version.o  -Wl,--whole-archive block/.libs/libgslblock.a matrix/.libs/libgslmatrix.a vector/.libs/libgslvector.a rng/.libs/libgslrng.a randist/.libs/libgslrandist.a cdf/.libs/libgslcdf.a specfunc/.libs/libgslspecfunc.a linalg/.libs/libgsllinalg.a statistics/.libs/libgslstatistics.a blas/.libs/libgslblas.a roots/.libs/libgslroots.a err/.libs/libgslerr.a min/.libs/libgslmin.a permutation/.libs/libgslpermutation.a complex/.libs/libgslcomplex.a sys/.libs/libgslsys.a eigen/.libs/libgsleigen.a -Wl,--no-whole-archive  -Wl,-rpath -Wl,/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/cblas/.libs -Wl,-rpath -Wl,/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib -L/usr/local/lib cblas/.libs/libgslcblas.so -lm    -Wl,-soname -Wl,libgsl.so.0 -o .libs/libgsl.so.0.14.0
libtool: link: (cd ".libs" && rm -f "libgsl.so.0" && ln -s "libgsl.so.0.14.0" "libgsl.so.0")
libtool: link: (cd ".libs" && rm -f "libgsl.so" && ln -s "libgsl.so.0.14.0" "libgsl.so")
libtool: link: ( cd ".libs" && rm -f "libgsl.la" && ln -s "../libgsl.la" "libgsl.la" )
gcc -DHAVE_CONFIG_H -I.   -I/usr/local/include  -g -O2 -Wall -c gsl-randist.c
/bin/bash ./libtool --tag=CC   --mode=link gcc  -g -O2 -Wall  -L/usr/local/lib -o gsl-randist gsl-randist.o libgsl.la cblas/libgslcblas.la -lm 
libtool: link: gcc -g -O2 -Wall -o .libs/gsl-randist gsl-randist.o  -L/usr/local/lib ./.libs/libgsl.so /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/cblas/.libs/libgslcblas.so cblas/.libs/libgslcblas.so -lm -Wl,-rpath -Wl,/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib
creating gsl-config
creating gsl.pc
make[2]: Entering directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13'
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib"
 /bin/bash ./libtool   --mode=install /usr/bin/install -c   libgsl.la '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib'
libtool: install: warning: relinking `libgsl.la'
libtool: install: (cd /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13; /bin/bash /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13/libtool  --tag CC --mode=relink gcc -g -O2 -Wall -version-info 14:0:14 -L/usr/local/lib -o libgsl.la -rpath /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib version.lo block/libgslblock.la matrix/libgslmatrix.la vector/libgslvector.la rng/libgslrng.la randist/libgslrandist.la cdf/libgslcdf.la cblas/libgslcblas.la specfunc/libgslspecfunc.la linalg/libgsllinalg.la statistics/libgslstatistics.la blas/libgslblas.la roots/libgslroots.la err/libgslerr.la min/libgslmin.la permutation/libgslpermutation.la complex/libgslcomplex.la sys/libgslsys.la eigen/libgsleigen.la -lm )
libtool: relink: gcc -shared  .libs/version.o  -Wl,--whole-archive block/.libs/libgslblock.a matrix/.libs/libgslmatrix.a vector/.libs/libgslvector.a rng/.libs/libgslrng.a randist/.libs/libgslrandist.a cdf/.libs/libgslcdf.a specfunc/.libs/libgslspecfunc.a linalg/.libs/libgsllinalg.a statistics/.libs/libgslstatistics.a blas/.libs/libgslblas.a roots/.libs/libgslroots.a err/.libs/libgslerr.a min/.libs/libgslmin.a permutation/.libs/libgslpermutation.a complex/.libs/libgslcomplex.a sys/.libs/libgslsys.a eigen/.libs/libgsleigen.a -Wl,--no-whole-archive  -Wl,-rpath -Wl,/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib -L/usr/local/lib -L/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib -lgslcblas -lm    -Wl,-soname -Wl,libgsl.so.0 -o .libs/libgsl.so.0.14.0
libtool: install: /usr/bin/install -c .libs/libgsl.so.0.14.0T /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib/libgsl.so.0.14.0
libtool: install: (cd /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib && { ln -s -f libgsl.so.0.14.0 libgsl.so.0 || { rm -f libgsl.so.0 && ln -s libgsl.so.0.14.0 libgsl.so.0; }; })
libtool: install: (cd /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib && { ln -s -f libgsl.so.0.14.0 libgsl.so || { rm -f libgsl.so && ln -s libgsl.so.0.14.0 libgsl.so; }; })
libtool: install: /usr/bin/install -c .libs/libgsl.lai /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib/libgsl.la
libtool: finish: PATH="/usr/bin:/bin:/usr/local/bin:/snap/bin:/usr/local/root/bin:/usr/local/ensembl-vep:/sbin" ldconfig -n /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/bin" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/bin"
  /bin/bash ./libtool   --mode=install /usr/bin/install -c gsl-randist '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/bin'
libtool: install: /usr/bin/install -c .libs/gsl-randist /home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/bin/gsl-randist
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/bin" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/bin"
 /usr/bin/install -c gsl-config '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/bin'
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/share/aclocal" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/share/aclocal"
 /usr/bin/install -c -m 644 gsl.m4 '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/share/aclocal'
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib/pkgconfig" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib/pkgconfig"
 /usr/bin/install -c -m 644 gsl.pc '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/lib/pkgconfig'
test -z "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl"
 /usr/bin/install -c -m 644 gsl_math.h gsl_pow_int.h gsl_nan.h gsl_machine.h gsl_mode.h gsl_precision.h gsl_types.h gsl_version.h gsl_minmax.h gsl_inline.h '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13'
make[1]: Leaving directory '/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gsl-1.13'
configure: Using the following compilation and linking flags for flowClust
configure:    PKG_CFLAGS= -I/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include
configure:    PKG_LIBS=
configure:    FLOWCLUST_DEFS=-DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC
configure: Compiling using GSL version: '1.13.0'.
configure: Using bundled GSL: 'yes'.
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -I/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fpic  -g -O2  -Wall -c BoxCox.c -o BoxCox.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -I/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fpic  -g -O2  -Wall -c BoxCoxPriors.c -o BoxCoxPriors.o
BoxCoxPriors.c: In function ‘BoxCoxGradientPriors’:
BoxCoxPriors.c:57:16: warning: unused variable ‘rowZ’ [-Wunused-variable]
  rowPrecision, rowZ, rowLambda0;
                ^~~~
BoxCoxPriors.c:33:24: warning: unused variable ‘kappa0’ [-Wunused-variable]
  double *nu0 = p->nu0, kappa0 = p->kappa0;
                        ^~~~~~
BoxCoxPriors.c:32:7: warning: unused variable ‘itersolve’ [-Wunused-variable]
  int *itersolve = p->itersolve;
       ^~~~~~~~~
BoxCoxPriors.c:31:6: warning: unused variable ‘iter’ [-Wunused-variable]
  int iter = p->iter;
      ^~~~
BoxCoxPriors.c:28:6: warning: unused variable ‘model’ [-Wunused-variable]
  int model = *p->model;
      ^~~~~
BoxCoxPriors.c:23:14: warning: unused variable ‘SumZlogY’ [-Wunused-variable]
  gsl_vector *SumZlogY = p->SumZlogY;
              ^~~~~~~~
BoxCoxPriors.c:15:14: warning: unused variable ‘Precision’ [-Wunused-variable]
  gsl_matrix *Precision = p->Precision; // will be updated
              ^~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -I/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fpic  -g -O2  -Wall -c Nu.c -o Nu.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -I/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fpic  -g -O2  -Wall -c flowClust.c -o flowClust.o
flowClust.c: In function ‘flowClust’:
flowClust.c:48:2: warning: unused variable ‘matrixZUY2’ [-Wunused-variable]
  matrixZUY2;
  ^~~~~~~~~~
flowClust.c:46:48: warning: unused variable ‘subRowZUY2’ [-Wunused-variable]
  rowYTransS, rowZUY, subRowZUY, rowZ, rowZUY2, subRowZUY2;
                                                ^~~~~~~~~~
flowClust.c:46:39: warning: unused variable ‘rowZUY2’ [-Wunused-variable]
  rowYTransS, rowZUY, subRowZUY, rowZ, rowZUY2, subRowZUY2;
                                       ^~~~~~~
flowClust.c: In function ‘ECMUpdateSigmaG2’:
flowClust.c:1111:6: warning: unused variable ‘i’ [-Wunused-variable]
  int i=0;
      ^
At top level:
flowClust.c:10:27: warning: ‘CEntries’ defined but not used [-Wunused-const-variable=]
 static const R_CMethodDef CEntries[] = { { "flowClust", (DL_FUNC) & flowClust,
                           ^~~~~~~~
flowClust.c: In function ‘flowClust’:
flowClust.c:702:11: warning: ‘s3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
    status = gsl_min_fminimizer_set(s3, &F3, *nu, *nuLow, *nuUp);
    ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
flowClust.c:647:13: warning: ‘s2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       nu_hi = gsl_root_fsolver_x_upper(s2);
       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
flowClust.c:348:12: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       x_hi = gsl_root_fsolver_x_upper(s);
       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -I/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fpic  -g -O2  -Wall -c flowClustGaussian.c -o flowClustGaussian.o
flowClustGaussian.c: In function ‘flowClustGaussian’:
flowClustGaussian.c:207:12: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       x_hi = gsl_root_fsolver_x_upper(s);
       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include  -I/home/biocbuild/bbs-3.11-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fpic  -g -O2  -Wall -c ranMVNT.c -o ranMVNT.o
gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o flowClust.so BoxCox.o BoxCoxPriors.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o gsl-1.13/err/.libs/stream.o gsl-1.13/err/.libs/strerror.o gsl-1.13/err/.libs/message.o gsl-1.13/err/.libs/error.o gsl-1.13/permutation/.libs/init.o gsl-1.13/permutation/.libs/permute.o gsl-1.13/permutation/.libs/file.o gsl-1.13/permutation/.libs/permutation.o gsl-1.13/permutation/.libs/canonical.o gsl-1.13/permutation/.libs/inline.o gsl-1.13/randist/.libs/cauchy.o gsl-1.13/randist/.libs/hyperg.o gsl-1.13/randist/.libs/pascal.o gsl-1.13/randist/.libs/nbinomial.o gsl-1.13/randist/.libs/discrete.o gsl-1.13/randist/.libs/laplace.o gsl-1.13/randist/.libs/beta.o gsl-1.13/randist/.libs/pareto.o gsl-1.13/randist/.libs/erlang.o gsl-1.13/randist/.libs/exponential.o gsl-1.13/randist/.libs/exppow.o gsl-1.13/randist/.libs/logistic.o gsl-1.13/randist/.libs/rayleigh.o gsl-1.13/randist/.libs/poisson.o gsl-1.13/randist/.libs/fdist.o gsl-1.13/randist/.libs/gumbel.o gsl-1.13/randist/.libs/binomial.o gsl-1.13/randist/.libs/chisq.o gsl-1.13/randist/.libs/bigauss.o gsl-1.13/randist/.libs/gausszig.o gsl-1.13/randist/.libs/sphere.o gsl-1.13/randist/.libs/gausstail.o gsl-1.13/randist/.libs/weibull.o gsl-1.13/randist/.libs/geometric.o gsl-1.13/randist/.libs/shuffle.o gsl-1.13/randist/.libs/dirichlet.o gsl-1.13/randist/.libs/tdist.o gsl-1.13/randist/.libs/binomial_tpe.o gsl-1.13/randist/.libs/bernoulli.o gsl-1.13/randist/.libs/multinomial.o gsl-1.13/randist/.libs/gauss.o gsl-1.13/randist/.libs/lognormal.o gsl-1.13/randist/.libs/logarithmic.o gsl-1.13/randist/.libs/gamma.o gsl-1.13/randist/.libs/landau.o gsl-1.13/randist/.libs/flat.o gsl-1.13/randist/.libs/levy.o gsl-1.13/complex/.libs/math.o gsl-1.13/complex/.libs/inline.o gsl-1.13/block/.libs/init.o gsl-1.13/block/.libs/file.o gsl-1.13/block/.libs/block.o gsl-1.13/cblas/.libs/cgbmv.o gsl-1.13/cblas/.libs/strmv.o gsl-1.13/cblas/.libs/cgeru.o gsl-1.13/cblas/.libs/scnrm2.o gsl-1.13/cblas/.libs/sscal.o gsl-1.13/cblas/.libs/sger.o gsl-1.13/cblas/.libs/dgbmv.o gsl-1.13/cblas/.libs/zher2k.o gsl-1.13/cblas/.libs/chpr2.o gsl-1.13/cblas/.libs/dswap.o gsl-1.13/cblas/.libs/cdotc_sub.o gsl-1.13/cblas/.libs/cgemv.o gsl-1.13/cblas/.libs/icamax.o gsl-1.13/cblas/.libs/sgbmv.o gsl-1.13/cblas/.libs/ctpsv.o gsl-1.13/cblas/.libs/zhbmv.o gsl-1.13/cblas/.libs/csyrk.o gsl-1.13/cblas/.libs/drotm.o gsl-1.13/cblas/.libs/dsyr.o gsl-1.13/cblas/.libs/zgbmv.o gsl-1.13/cblas/.libs/cher2k.o gsl-1.13/cblas/.libs/ctbmv.o gsl-1.13/cblas/.libs/ssymv.o gsl-1.13/cblas/.libs/dtpmv.o gsl-1.13/cblas/.libs/dspmv.o gsl-1.13/cblas/.libs/zsymm.o gsl-1.13/cblas/.libs/dtbmv.o gsl-1.13/cblas/.libs/strsv.o gsl-1.13/cblas/.libs/sdot.o gsl-1.13/cblas/.libs/cdotu_sub.o gsl-1.13/cblas/.libs/sspr.o gsl-1.13/cblas/.libs/zaxpy.o gsl-1.13/cblas/.libs/snrm2.o gsl-1.13/cblas/.libs/scasum.o gsl-1.13/cblas/.libs/csyr2k.o gsl-1.13/cblas/.libs/ztrsv.o gsl-1.13/cblas/.libs/ssyrk.o gsl-1.13/cblas/.libs/srot.o gsl-1.13/cblas/.libs/dtpsv.o gsl-1.13/cblas/.libs/zhpmv.o gsl-1.13/cblas/.libs/ctpmv.o gsl-1.13/cblas/.libs/dsymv.o gsl-1.13/cblas/.libs/zgeru.o gsl-1.13/cblas/.libs/ztrmv.o gsl-1.13/cblas/.libs/dtbsv.o gsl-1.13/cblas/.libs/ctrmm.o gsl-1.13/cblas/.libs/dasum.o gsl-1.13/cblas/.libs/dcopy.o gsl-1.13/cblas/.libs/chpmv.o gsl-1.13/cblas/.libs/srotg.o gsl-1.13/cblas/.libs/chemm.o gsl-1.13/cblas/.libs/ssbmv.o gsl-1.13/cblas/.libs/dtrsm.o gsl-1.13/cblas/.libs/zswap.o gsl-1.13/cblas/.libs/dsdot.o gsl-1.13/cblas/.libs/zsyr2k.o gsl-1.13/cblas/.libs/sgemm.o gsl-1.13/cblas/.libs/ssymm.o gsl-1.13/cblas/.libs/dzasum.o gsl-1.13/cblas/.libs/dspr.o gsl-1.13/cblas/.libs/dsymm.o gsl-1.13/cblas/.libs/zher.o gsl-1.13/cblas/.libs/sspr2.o gsl-1.13/cblas/.libs/srotm.o gsl-1.13/cblas/.libs/strsm.o gsl-1.13/cblas/.libs/ctrsv.o gsl-1.13/cblas/.libs/zhpr.o gsl-1.13/cblas/.libs/ctrmv.o gsl-1.13/cblas/.libs/sgemv.o gsl-1.13/cblas/.libs/stpsv.o gsl-1.13/cblas/.libs/zhemv.o gsl-1.13/cblas/.libs/ccopy.o gsl-1.13/cblas/.libs/cgerc.o gsl-1.13/cblas/.libs/drot.o gsl-1.13/cblas/.libs/zgemv.o gsl-1.13/cblas/.libs/ssyr.o gsl-1.13/cblas/.libs/cher.o gsl-1.13/cblas/.libs/dscal.o gsl-1.13/cblas/.libs/cscal.o gsl-1.13/cblas/.libs/dger.o gsl-1.13/cblas/.libs/chemv.o gsl-1.13/cblas/.libs/daxpy.o gsl-1.13/cblas/.libs/ztrmm.o gsl-1.13/cblas/.libs/ztbmv.o gsl-1.13/cblas/.libs/dsyr2.o gsl-1.13/cblas/.libs/dnrm2.o gsl-1.13/cblas/.libs/stbmv.o gsl-1.13/cblas/.libs/zhemm.o gsl-1.13/cblas/.libs/sswap.o gsl-1.13/cblas/.libs/zherk.o gsl-1.13/cblas/.libs/cgemm.o gsl-1.13/cblas/.libs/saxpy.o gsl-1.13/cblas/.libs/stpmv.o gsl-1.13/cblas/.libs/zdotc_sub.o gsl-1.13/cblas/.libs/strmm.o gsl-1.13/cblas/.libs/ztpmv.o gsl-1.13/cblas/.libs/chbmv.o gsl-1.13/cblas/.libs/dtrmv.o gsl-1.13/cblas/.libs/sdsdot.o gsl-1.13/cblas/.libs/sasum.o gsl-1.13/cblas/.libs/dgemm.o gsl-1.13/cblas/.libs/sspmv.o gsl-1.13/cblas/.libs/ctbsv.o gsl-1.13/cblas/.libs/zhpr2.o gsl-1.13/cblas/.libs/ssyr2.o gsl-1.13/cblas/.libs/cswap.o gsl-1.13/cblas/.libs/ztbsv.o gsl-1.13/cblas/.libs/zcopy.o gsl-1.13/cblas/.libs/caxpy.o gsl-1.13/cblas/.libs/dsyr2k.o gsl-1.13/cblas/.libs/zdotu_sub.o gsl-1.13/cblas/.libs/zgerc.o gsl-1.13/cblas/.libs/scopy.o gsl-1.13/cblas/.libs/xerbla.o gsl-1.13/cblas/.libs/idamax.o gsl-1.13/cblas/.libs/izamax.o gsl-1.13/cblas/.libs/ddot.o gsl-1.13/cblas/.libs/drotg.o gsl-1.13/cblas/.libs/zscal.o gsl-1.13/cblas/.libs/ssyr2k.o gsl-1.13/cblas/.libs/dsbmv.o gsl-1.13/cblas/.libs/chpr.o gsl-1.13/cblas/.libs/srotmg.o gsl-1.13/cblas/.libs/zher2.o gsl-1.13/cblas/.libs/dgemv.o gsl-1.13/cblas/.libs/zdscal.o gsl-1.13/cblas/.libs/ztpsv.o gsl-1.13/cblas/.libs/zgemm.o gsl-1.13/cblas/.libs/dspr2.o gsl-1.13/cblas/.libs/csymm.o gsl-1.13/cblas/.libs/dznrm2.o gsl-1.13/cblas/.libs/dtrmm.o gsl-1.13/cblas/.libs/ztrsm.o gsl-1.13/cblas/.libs/csscal.o gsl-1.13/cblas/.libs/zsyrk.o gsl-1.13/cblas/.libs/ctrsm.o gsl-1.13/cblas/.libs/cher2.o gsl-1.13/cblas/.libs/stbsv.o gsl-1.13/cblas/.libs/isamax.o gsl-1.13/cblas/.libs/dsyrk.o gsl-1.13/cblas/.libs/cherk.o gsl-1.13/cblas/.libs/drotmg.o gsl-1.13/cblas/.libs/dtrsv.o gsl-1.13/sys/.libs/ldfrexp.o gsl-1.13/sys/.libs/log1p.o gsl-1.13/sys/.libs/invhyp.o gsl-1.13/sys/.libs/hypot.o gsl-1.13/sys/.libs/coerce.o gsl-1.13/sys/.libs/pow_int.o gsl-1.13/sys/.libs/infnan.o gsl-1.13/sys/.libs/minmax.o gsl-1.13/sys/.libs/expm1.o gsl-1.13/sys/.libs/prec.o gsl-1.13/sys/.libs/fdiv.o gsl-1.13/sys/.libs/fcmp.o gsl-1.13/blas/.libs/blas.o gsl-1.13/rng/.libs/slatec.o gsl-1.13/rng/.libs/fishman20.o gsl-1.13/rng/.libs/file.o gsl-1.13/rng/.libs/rand48.o gsl-1.13/rng/.libs/zuf.o gsl-1.13/rng/.libs/fishman18.o gsl-1.13/rng/.libs/transputer.o gsl-1.13/rng/.libs/mrg.o gsl-1.13/rng/.libs/ranf.o gsl-1.13/rng/.libs/tt.o gsl-1.13/rng/.libs/vax.o gsl-1.13/rng/.libs/lecuyer21.o gsl-1.13/rng/.libs/inline.o gsl-1.13/rng/.libs/ranlux.o gsl-1.13/rng/.libs/knuthran2002.o gsl-1.13/rng/.libs/minstd.o gsl-1.13/rng/.libs/taus113.o gsl-1.13/rng/.libs/gfsr4.o gsl-1.13/rng/.libs/fishman2x.o gsl-1.13/rng/.libs/waterman14.o gsl-1.13/rng/.libs/ran3.o gsl-1.13/rng/.libs/ran0.o gsl-1.13/rng/.libs/mt.o gsl-1.13/rng/.libs/knuthran2.o gsl-1.13/rng/.libs/uni.o gsl-1.13/rng/.libs/random.o gsl-1.13/rng/.libs/ranlxd.o gsl-1.13/rng/.libs/ranmar.o gsl-1.13/rng/.libs/ran1.o gsl-1.13/rng/.libs/r250.o gsl-1.13/rng/.libs/borosh13.o gsl-1.13/rng/.libs/coveyou.o gsl-1.13/rng/.libs/rand.o gsl-1.13/rng/.libs/cmrg.o gsl-1.13/rng/.libs/uni32.o gsl-1.13/rng/.libs/taus.o gsl-1.13/rng/.libs/rng.o gsl-1.13/rng/.libs/randu.o gsl-1.13/rng/.libs/ranlxs.o gsl-1.13/rng/.libs/types.o gsl-1.13/rng/.libs/ran2.o gsl-1.13/rng/.libs/default.o gsl-1.13/rng/.libs/knuthran.o gsl-1.13/eigen/.libs/gensymmv.o gsl-1.13/eigen/.libs/symm.o gsl-1.13/eigen/.libs/genherm.o gsl-1.13/eigen/.libs/nonsymm.o gsl-1.13/eigen/.libs/genv.o gsl-1.13/eigen/.libs/schur.o gsl-1.13/eigen/.libs/gen.o gsl-1.13/eigen/.libs/sort.o gsl-1.13/eigen/.libs/hermv.o gsl-1.13/eigen/.libs/gensymm.o gsl-1.13/eigen/.libs/symmv.o gsl-1.13/eigen/.libs/genhermv.o gsl-1.13/eigen/.libs/nonsymmv.o gsl-1.13/eigen/.libs/francis.o gsl-1.13/eigen/.libs/jacobi.o gsl-1.13/eigen/.libs/herm.o gsl-1.13/vector/.libs/init.o gsl-1.13/vector/.libs/subvector.o gsl-1.13/vector/.libs/oper.o gsl-1.13/vector/.libs/file.o gsl-1.13/vector/.libs/copy.o gsl-1.13/vector/.libs/minmax.o gsl-1.13/vector/.libs/vector.o gsl-1.13/vector/.libs/swap.o gsl-1.13/vector/.libs/reim.o gsl-1.13/vector/.libs/prop.o gsl-1.13/vector/.libs/view.o gsl-1.13/linalg/.libs/symmtd.o gsl-1.13/linalg/.libs/lu.o gsl-1.13/linalg/.libs/luc.o gsl-1.13/linalg/.libs/choleskyc.o gsl-1.13/linalg/.libs/balance.o gsl-1.13/linalg/.libs/exponential.o gsl-1.13/linalg/.libs/bidiag.o gsl-1.13/linalg/.libs/lq.o gsl-1.13/linalg/.libs/ptlq.o gsl-1.13/linalg/.libs/hh.o gsl-1.13/linalg/.libs/balancemat.o gsl-1.13/linalg/.libs/multiply.o gsl-1.13/linalg/.libs/qr.o gsl-1.13/linalg/.libs/hesstri.o gsl-1.13/linalg/.libs/householder.o gsl-1.13/linalg/.libs/householdercomplex.o gsl-1.13/linalg/.libs/qrpt.o gsl-1.13/linalg/.libs/tridiag.o gsl-1.13/linalg/.libs/hessenberg.o gsl-1.13/linalg/.libs/cholesky.o gsl-1.13/linalg/.libs/hermtd.o gsl-1.13/linalg/.libs/svd.o gsl-1.13/matrix/.libs/init.o gsl-1.13/matrix/.libs/oper.o gsl-1.13/matrix/.libs/file.o gsl-1.13/matrix/.libs/copy.o gsl-1.13/matrix/.libs/submatrix.o gsl-1.13/matrix/.libs/getset.o gsl-1.13/matrix/.libs/minmax.o gsl-1.13/matrix/.libs/swap.o gsl-1.13/matrix/.libs/matrix.o gsl-1.13/matrix/.libs/rowcol.o gsl-1.13/matrix/.libs/prop.o gsl-1.13/matrix/.libs/view.o gsl-1.13/cdf/.libs/cauchyinv.o gsl-1.13/cdf/.libs/gauss.o gsl-1.13/cdf/.libs/nbinomial.o gsl-1.13/cdf/.libs/gumbel2.o gsl-1.13/cdf/.libs/gammainv.o gsl-1.13/cdf/.libs/cauchy.o gsl-1.13/cdf/.libs/laplaceinv.o gsl-1.13/cdf/.libs/beta.o gsl-1.13/cdf/.libs/gumbel1.o gsl-1.13/cdf/.libs/fdist.o gsl-1.13/cdf/.libs/paretoinv.o gsl-1.13/cdf/.libs/pareto.o gsl-1.13/cdf/.libs/gaussinv.o gsl-1.13/cdf/.libs/lognormalinv.o gsl-1.13/cdf/.libs/exponential.o gsl-1.13/cdf/.libs/exppow.o gsl-1.13/cdf/.libs/hypergeometric.o gsl-1.13/cdf/.libs/logistic.o gsl-1.13/cdf/.libs/rayleigh.o gsl-1.13/cdf/.libs/betainv.o gsl-1.13/cdf/.libs/poisson.o gsl-1.13/cdf/.libs/fdistinv.o gsl-1.13/cdf/.libs/binomial.o gsl-1.13/cdf/.libs/weibull.o gsl-1.13/cdf/.libs/chisq.o gsl-1.13/cdf/.libs/tdistinv.o gsl-1.13/cdf/.libs/rayleighinv.o gsl-1.13/cdf/.libs/flatinv.o gsl-1.13/cdf/.libs/pascal.o gsl-1.13/cdf/.libs/weibullinv.o gsl-1.13/cdf/.libs/geometric.o gsl-1.13/cdf/.libs/logisticinv.o gsl-1.13/cdf/.libs/exponentialinv.o gsl-1.13/cdf/.libs/tdist.o gsl-1.13/cdf/.libs/chisqinv.o gsl-1.13/cdf/.libs/gumbel1inv.o gsl-1.13/cdf/.libs/gamma.o gsl-1.13/cdf/.libs/laplace.o gsl-1.13/cdf/.libs/flat.o gsl-1.13/cdf/.libs/lognormal.o gsl-1.13/cdf/.libs/gumbel2inv.o gsl-1.13/specfunc/.libs/bessel_Knu.o gsl-1.13/specfunc/.libs/mathieu_charv.o gsl-1.13/specfunc/.libs/laguerre.o gsl-1.13/specfunc/.libs/transport.o gsl-1.13/specfunc/.libs/bessel_I1.o gsl-1.13/specfunc/.libs/sinint.o gsl-1.13/specfunc/.libs/bessel_temme.o gsl-1.13/specfunc/.libs/legendre_poly.o gsl-1.13/specfunc/.libs/hyperg_U.o gsl-1.13/specfunc/.libs/elementary.o gsl-1.13/specfunc/.libs/beta_inc.o gsl-1.13/specfunc/.libs/hyperg_0F1.o gsl-1.13/specfunc/.libs/airy_der.o gsl-1.13/specfunc/.libs/bessel_K1.o gsl-1.13/specfunc/.libs/bessel_Y1.o gsl-1.13/specfunc/.libs/bessel_Yn.o gsl-1.13/specfunc/.libs/clausen.o gsl-1.13/specfunc/.libs/dawson.o gsl-1.13/specfunc/.libs/elljac.o gsl-1.13/specfunc/.libs/debye.o gsl-1.13/specfunc/.libs/bessel_Inu.o gsl-1.13/specfunc/.libs/synchrotron.o gsl-1.13/specfunc/.libs/mathieu_angfunc.o gsl-1.13/specfunc/.libs/ellint.o gsl-1.13/specfunc/.libs/coupling.o gsl-1.13/specfunc/.libs/fermi_dirac.o gsl-1.13/specfunc/.libs/expint3.o gsl-1.13/specfunc/.libs/trig.o gsl-1.13/specfunc/.libs/hyperg_2F0.o gsl-1.13/specfunc/.libs/legendre_Qn.o gsl-1.13/specfunc/.libs/mathieu_radfunc.o gsl-1.13/specfunc/.libs/bessel_In.o gsl-1.13/specfunc/.libs/beta.o gsl-1.13/specfunc/.libs/erfc.o gsl-1.13/specfunc/.libs/poch.o gsl-1.13/specfunc/.libs/mathieu_coeff.o gsl-1.13/specfunc/.libs/atanint.o gsl-1.13/specfunc/.libs/bessel.o gsl-1.13/specfunc/.libs/bessel_Jnu.o gsl-1.13/specfunc/.libs/bessel_Y0.o gsl-1.13/specfunc/.libs/bessel_Kn.o gsl-1.13/specfunc/.libs/bessel_zero.o gsl-1.13/specfunc/.libs/shint.o gsl-1.13/specfunc/.libs/bessel_J1.o gsl-1.13/specfunc/.libs/log.o gsl-1.13/specfunc/.libs/coulomb_bound.o gsl-1.13/specfunc/.libs/pow_int.o gsl-1.13/specfunc/.libs/bessel_K0.o gsl-1.13/specfunc/.libs/bessel_J0.o gsl-1.13/specfunc/.libs/bessel_I0.o gsl-1.13/specfunc/.libs/gamma.o gsl-1.13/specfunc/.libs/expint.o gsl-1.13/specfunc/.libs/airy.o gsl-1.13/specfunc/.libs/bessel_amp_phase.o gsl-1.13/specfunc/.libs/bessel_Ynu.o gsl-1.13/specfunc/.libs/zeta.o gsl-1.13/specfunc/.libs/lambert.o gsl-1.13/specfunc/.libs/bessel_y.o gsl-1.13/specfunc/.libs/gamma_inc.o gsl-1.13/specfunc/.libs/hyperg_1F1.o gsl-1.13/specfunc/.libs/bessel_j.o gsl-1.13/specfunc/.libs/hyperg_2F1.o gsl-1.13/specfunc/.libs/coulomb.o gsl-1.13/specfunc/.libs/bessel_sequence.o gsl-1.13/specfunc/.libs/gegenbauer.o gsl-1.13/specfunc/.libs/legendre_H3d.o gsl-1.13/specfunc/.libs/bessel_k.o gsl-1.13/specfunc/.libs/hyperg.o gsl-1.13/specfunc/.libs/airy_zero.o gsl-1.13/specfunc/.libs/result.o gsl-1.13/specfunc/.libs/dilog.o gsl-1.13/specfunc/.libs/psi.o gsl-1.13/specfunc/.libs/legendre_con.o gsl-1.13/specfunc/.libs/bessel_i.o gsl-1.13/specfunc/.libs/bessel_Jn.o gsl-1.13/specfunc/.libs/bessel_olver.o gsl-1.13/specfunc/.libs/mathieu_workspace.o gsl-1.13/specfunc/.libs/exp.o gsl-1.13/roots/.libs/convergence.o gsl-1.13/roots/.libs/bisection.o gsl-1.13/roots/.libs/falsepos.o gsl-1.13/roots/.libs/fsolver.o gsl-1.13/roots/.libs/fdfsolver.o gsl-1.13/roots/.libs/newton.o gsl-1.13/roots/.libs/secant.o gsl-1.13/roots/.libs/brent.o gsl-1.13/roots/.libs/steffenson.o gsl-1.13/min/.libs/convergence.o gsl-1.13/min/.libs/fsolver.o gsl-1.13/min/.libs/quad_golden.o gsl-1.13/min/.libs/golden.o gsl-1.13/min/.libs/brent.o gsl-1.13/min/.libs/bracketing.o gsl-1.13/statistics/.libs/quantiles.o gsl-1.13/statistics/.libs/absdev.o gsl-1.13/statistics/.libs/covariance.o gsl-1.13/statistics/.libs/wkurtosis.o gsl-1.13/statistics/.libs/wabsdev.o gsl-1.13/statistics/.libs/mean.o gsl-1.13/statistics/.libs/wmean.o gsl-1.13/statistics/.libs/skew.o gsl-1.13/statistics/.libs/minmax.o gsl-1.13/statistics/.libs/p_variance.o gsl-1.13/statistics/.libs/median.o gsl-1.13/statistics/.libs/lag1.o gsl-1.13/statistics/.libs/ttest.o gsl-1.13/statistics/.libs/wvariance.o gsl-1.13/statistics/.libs/wskew.o gsl-1.13/statistics/.libs/kurtosis.o gsl-1.13/statistics/.libs/variance.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-flowClust/00new/flowClust/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘Map’ in package ‘flowClust’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowClust)

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> library(testthat)
> library(flowClust)

Attaching package: 'flowClust'

The following object is masked from 'package:graphics':

    box

The following object is masked from 'package:base':

    Map

> 
> test_check("flowClust")
══ testthat results  ═══════════════════════════════════════════════════════════
[ OK: 43 | SKIPPED: 1 | WARNINGS: 13 | FAILED: 0 ]
> 
> #devtools::test("~/rglab/workspace/flowClust")
> 
> #taking quite some time , thus only for internal testing
> #test_file("~/rglab/workspace/flowClust/tests/testthat/flowClust-gated-data.R")
> #tools::checkDocFiles(dir = ".")
> 
> proc.time()
   user  system elapsed 
221.147   3.451 146.087