Johannes Rainer
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/ensembldb |
| Branch: RELEASE_3_11 |
| Last Commit: ee79696 |
| Last Changed Date: 2020-05-06 16:12:22 -0400 (Wed, 06 May 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:31 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE ensembldb PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 548/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ensembldb 2.12.1 Johannes Rainer
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: ensembldb |
| Version: 2.12.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ensembldb_2.12.1.tar.gz && rm -rf ensembldb.buildbin-libdir && mkdir ensembldb.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ensembldb.buildbin-libdir ensembldb_2.12.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ensembldb_2.12.1.zip && rm ensembldb_2.12.1.tar.gz ensembldb_2.12.1.zip |
| StartedAt: 2020-10-16 19:17:08 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:19:55 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 166.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ensembldb_2.12.1.tar.gz && rm -rf ensembldb.buildbin-libdir && mkdir ensembldb.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ensembldb.buildbin-libdir ensembldb_2.12.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ensembldb_2.12.1.zip && rm ensembldb_2.12.1.tar.gz ensembldb_2.12.1.zip
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install for i386
* installing *source* package 'ensembldb' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ensembldb'
finding HTML links ... done
Deprecated html
EnsDb-AnnotationDbi html
EnsDb-class html
EnsDb-exonsBy html
finding level-2 HTML links ... done
EnsDb-lengths html
EnsDb-seqlevels html
EnsDb-sequences html
EnsDb-utils html
EnsDb html
Filter-classes html
ProteinFunctionality html
cdsToTranscript html
convertFilter html
genomeToProtein html
genomeToTranscript html
global-filters html
hasProteinData-EnsDb-method html
listEnsDbs html
makeEnsemblDbPackage html
proteinToGenome html
proteinToTranscript html
runEnsDbApp html
transcriptToCds html
transcriptToGenome html
transcriptToProtein html
useMySQL-EnsDb-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ensembldb' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ensembldb' as ensembldb_2.12.1.zip
* DONE (ensembldb)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'ensembldb' successfully unpacked and MD5 sums checked