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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL diffuStats
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘diffuStats’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c diffuse_parallel.cpp -o diffuse_parallel.o
diffuse_parallel.cpp: In function ‘arma::sp_mat convertSparse(Rcpp::S4)’:
diffuse_parallel.cpp:28:84: warning: ‘static eT* arma::memory::acquire_chunked(arma::uword) [with eT = double; arma::uword = unsigned int]’ is deprecated [-Wdeprecated-declarations]
   arma::access::rw(res.values) = arma::memory::acquire_chunked<double>(x.size() + 1);
                                                                                    ^
In file included from /home/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include/armadillo:372:0,
                 from /home/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:49,
                 from /home/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from diffuse_parallel.cpp:1:
/home/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include/armadillo_bits/memory.hpp:117:1: note: declared here
 memory::acquire_chunked(const uword n_elem)
 ^~~~~~
diffuse_parallel.cpp:32:94: warning: ‘static eT* arma::memory::acquire_chunked(arma::uword) [with eT = unsigned int; arma::uword = unsigned int]’ is deprecated [-Wdeprecated-declarations]
   arma::access::rw(res.row_indices) = arma::memory::acquire_chunked<arma::uword>(i.size() + 1);
                                                                                              ^
In file included from /home/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include/armadillo:372:0,
                 from /home/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:49,
                 from /home/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from diffuse_parallel.cpp:1:
/home/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include/armadillo_bits/memory.hpp:117:1: note: declared here
 memory::acquire_chunked(const uword n_elem)
 ^~~~~~
diffuse_parallel.cpp: In function ‘arma::sp_mat sparsify2(const mat&, int, const sp_mat&)’:
diffuse_parallel.cpp:69:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < pos.size(); ++i) {
                   ~~^~~~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c init.c -o init.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o diffuStats.so RcppExports.o diffuse_parallel.o init.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-diffuStats/00new/diffuStats/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (diffuStats)