Moritz Gerstung
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/deepSNV |
| Branch: RELEASE_3_11 |
| Last Commit: 80be4e4 |
| Last Changed Date: 2020-05-15 11:41:35 -0400 (Fri, 15 May 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:54:39 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE deepSNV PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 440/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| deepSNV 1.34.1 Moritz Gerstung
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: deepSNV |
| Version: 1.34.1 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL deepSNV |
| StartedAt: 2020-10-16 17:14:39 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:15:34 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 55.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL deepSNV
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘deepSNV’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.11-bioc/R/library/Rhtslib/include' -I/usr/local/include -fpic -g -O2 -Wall -c bam2R.cpp -o bam2R.o
bam2R.cpp: In function ‘int bam2R(char**, char**, int*, int*, int*, int*, int*, int*, int*, int*, int*, int*, int*, int*)’:
bam2R.cpp:97:13: warning: unused variable ‘iter’ [-Wunused-variable]
hts_itr_t *iter = NULL;
^~~~
bam2R.cpp:100:6: warning: unused variable ‘c’ [-Wunused-variable]
int c = 0;
^
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.11-bioc/R/library/Rhtslib/include' -I/usr/local/include -fpic -g -O2 -Wall -c betabinom.c -o betabinom.o
betabinom.c: In function ‘pbb’:
betabinom.c:27:9: warning: unused variable ‘log’ [-Wunused-variable]
int i, log=0;
^~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o deepSNV.so bam2R.o betabinom.o /home/biocbuild/bbs-3.11-bioc/R/library/Rhtslib/usrlib/libhts.a -lcurl -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-deepSNV/00new/deepSNV/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (deepSNV)