Rosario M. Piro
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/decompTumor2Sig |
| Branch: RELEASE_3_11 |
| Last Commit: 4d57dd7 |
| Last Changed Date: 2020-07-27 17:31:17 -0400 (Mon, 27 Jul 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:25 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE decompTumor2Sig PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 435/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| decompTumor2Sig 2.4.1 Rosario M. Piro
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: decompTumor2Sig |
| Version: 2.4.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/decompTumor2Sig_2.4.1.tar.gz && rm -rf decompTumor2Sig.buildbin-libdir && mkdir decompTumor2Sig.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=decompTumor2Sig.buildbin-libdir decompTumor2Sig_2.4.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL decompTumor2Sig_2.4.1.zip && rm decompTumor2Sig_2.4.1.tar.gz decompTumor2Sig_2.4.1.zip |
| StartedAt: 2020-10-16 19:17:12 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:20:18 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 186.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/decompTumor2Sig_2.4.1.tar.gz && rm -rf decompTumor2Sig.buildbin-libdir && mkdir decompTumor2Sig.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=decompTumor2Sig.buildbin-libdir decompTumor2Sig_2.4.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL decompTumor2Sig_2.4.1.zip && rm decompTumor2Sig_2.4.1.tar.gz decompTumor2Sig_2.4.1.zip
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install for i386
* installing *source* package 'decompTumor2Sig' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'decompTumor2Sig'
finding HTML links ... done
QPforSig html
addBestSignatureToSubset html
buildGenomesFromMutationData html
buildSortedAlexandrovSignaturePatternList
html
composeGenomesFromExposures html
computeExplainedVariance html
computeFrobeniusNorm html
computeRSS html
convAlx2Shi html
convertAlexandrov2Shiraishi html
convertGenomesFromVRanges html
decompTumor2Sig-package html
decomposeTumorGenomes html
determineSignatureDistances html
determineTypeNumBasesAndTrDir html
downgradeShiraishiSignatures html
evaluateDecompositionQuality html
getBestDecomp4Ksignatures html
getCountData html
getFeatVectList html
getGenomesFromMutFeatData html
getNumFlankingBases html
getNumSignatures html
getSampleList html
getSigFeatDist html
getSigFromEstParam html
getSigType html
getSignaturesFromEstParam html
haveTrDir html
is.probability.data.frame html
is.probability.data.frame.list html
is.probability.matrix html
is.probability.matrix.list html
is.probability.object html
is.probability.vector html
is.probability.vector.list html
isAlexandrovSet html
isBackGround html
isEstParamObject html
isExposureSet html
isMutFeatDataObject html
isShiraishiSet html
isSignatureSet html
mapSignatureSets html
plotAlexandrovModel html
plotDecomposedContribution html
plotExplainedVariance html
plotMutationDistribution html
plotShiraishiModel html
processMultipleSigSets html
readAlexandrovSignatures html
readGenomesFromMPF html
readGenomesFromVCF html
readShiraishiSignatures html
roundIntegerSum html
sameSignatureFormat html
setNames4ShiraishiTable html
setNumFlankingBases html
setSigFeatDist html
setSigType html
setTrDir html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'decompTumor2Sig' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'decompTumor2Sig' as decompTumor2Sig_2.4.1.zip
* DONE (decompTumor2Sig)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'decompTumor2Sig' successfully unpacked and MD5 sums checked