James W. MacDonald
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/copa |
| Branch: RELEASE_3_11 |
| Last Commit: 120a858 |
| Last Changed Date: 2020-04-27 14:12:59 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:58:18 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE copa PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 369/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| copa 1.56.0 James W. MacDonald
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | [ OK ] | |
| Package: copa |
| Version: 1.56.0 |
| Command: rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh copa_1.56.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R copa.buildbin-libdir |
| StartedAt: 2020-10-17 06:51:23 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 06:51:30 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 6.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: copa_1.56.0.tgz |
| PackageFileSize: 171.7 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh copa_1.56.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R copa.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=copa.buildbin-libdir copa_1.56.0.tar.gz' >>>>>>> * installing *source* package ‘copa’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c copa.c -o copa.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o copa.so copa.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.11-bioc/meat/copa.buildbin-libdir/00LOCK-copa/00new/copa/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (copa) >>>>>>> >>>>>>> FIXING LINKS FOR copa.buildbin-libdir/copa/libs/copa.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "copa.buildbin-libdir/copa/libs/copa.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "copa.buildbin-libdir/copa/libs/copa.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "copa.buildbin-libdir/copa/libs/copa.so"