Zuguang Gu
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/cola |
| Branch: RELEASE_3_11 |
| Last Commit: 182e341 |
| Last Changed Date: 2020-05-03 07:59:28 -0400 (Sun, 03 May 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:21 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE cola PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 351/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| cola 1.4.1 Zuguang Gu
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: cola |
| Version: 1.4.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/cola_1.4.1.tar.gz && rm -rf cola.buildbin-libdir && mkdir cola.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cola.buildbin-libdir cola_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL cola_1.4.1.zip && rm cola_1.4.1.tar.gz cola_1.4.1.zip |
| StartedAt: 2020-10-16 17:20:23 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:23:45 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 202.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/cola_1.4.1.tar.gz && rm -rf cola.buildbin-libdir && mkdir cola.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cola.buildbin-libdir cola_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL cola_1.4.1.zip && rm cola_1.4.1.tar.gz cola_1.4.1.zip
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install for i386
* installing *source* package 'cola' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cal_consensus_mat.cpp -o cal_consensus_mat.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pdist.cpp -o pdist.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o cola.dll tmp.def RcppExports.o cal_consensus_mat.o pdist.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/cola.buildbin-libdir/00LOCK-cola/00new/cola/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cola'
finding HTML links ... done
ATC html
ConsensusPartition-class html
ConsensusPartitionList-class html
Extract.ConsensusPartitionList html
ExtractExtract.ConsensusPartitionList html
FCC html
PAC html
aPAC html
adjust_matrix html
adjust_outlier html
all_partition_methods html
all_top_value_methods html
cola html
cola_opt html
cola_report-ConsensusPartition-method html
cola_report-ConsensusPartitionList-method
html
cola_report-dispatch html
cola_rl html
collect_classes-ConsensusPartition-method
html
collect_classes-ConsensusPartitionList-method
html
collect_classes-dispatch html
collect_plots-ConsensusPartition-method
html
collect_plots-ConsensusPartitionList-method
html
collect_plots-dispatch html
collect_stats-ConsensusPartition-method
html
collect_stats-ConsensusPartitionList-method
html
collect_stats-dispatch html
colnames-ConsensusPartition-method html
colnames-ConsensusPartitionList-method
html
colnames-dispatch html
compare_signatures-ConsensusPartition-method
html
concordance html
consensus_heatmap-ConsensusPartition-method
html
consensus_partition html
correspond_between_rankings html
correspond_between_two_rankings html
dim.ConsensusPartition html
dim.ConsensusPartitionList html
dimension_reduction-ConsensusPartition-method
html
dimension_reduction-dispatch html
dimension_reduction-matrix-method html
find_best_km html
functional_enrichment-ANY-method html
functional_enrichment-ConsensusPartition-method
html
functional_enrichment-ConsensusPartitionList-method
html
functional_enrichment-dispatch html
get_anno-ConsensusPartition-method html
get_anno-ConsensusPartitionList-method
html
get_anno-dispatch html
get_anno_col-ConsensusPartition-method
html
get_anno_col-ConsensusPartitionList-method
html
get_anno_col-dispatch html
get_classes-ConsensusPartition-method html
get_classes-ConsensusPartitionList-method
html
get_classes-dispatch html
get_consensus-ConsensusPartition-method
html
get_matrix-ConsensusPartition-method html
get_matrix-ConsensusPartitionList-method
html
get_matrix-dispatch html
get_membership-ConsensusPartition-method
html
get_membership-ConsensusPartitionList-method
html
get_membership-dispatch html
get_param-ConsensusPartition-method html
get_signatures-ConsensusPartition-method
html
get_stats-ConsensusPartition-method html
get_stats-ConsensusPartitionList-method
html
get_stats-dispatch html
is_best_k-ConsensusPartition-method html
is_best_k-ConsensusPartitionList-method
html
is_best_k-dispatch html
is_stable_k-ConsensusPartition-method html
is_stable_k-ConsensusPartitionList-method
html
is_stable_k-dispatch html
knitr_add_tab_item html
knitr_insert_tabs html
map_to_entrez_id html
membership_heatmap-ConsensusPartition-method
html
ncol-ConsensusPartition-method html
ncol-ConsensusPartitionList-method html
ncol-dispatch html
nrow-ConsensusPartition-method html
nrow-ConsensusPartitionList-method html
nrow-dispatch html
plot_ecdf-ConsensusPartition-method html
recalc_stats html
register_NMF html
register_SOM html
register_partition_methods html
register_top_value_methods html
relabel_class html
remove_partition_methods html
remove_top_value_methods html
rownames-ConsensusPartition-method html
rownames-ConsensusPartitionList-method
html
rownames-dispatch html
run_all_consensus_partition_methods html
select_partition_number-ConsensusPartition-method
html
show-ConsensusPartition-method html
show-ConsensusPartitionList-method html
show-dispatch html
submit_to_david html
suggest_best_k-ConsensusPartition-method
html
suggest_best_k-ConsensusPartitionList-method
html
suggest_best_k-dispatch html
test_between_factors html
test_to_known_factors-ConsensusPartition-method
html
test_to_known_factors-ConsensusPartitionList-method
html
test_to_known_factors-dispatch html
top_elements_overlap html
top_rows_heatmap-ConsensusPartitionList-method
html
top_rows_heatmap-dispatch html
top_rows_heatmap-matrix-method html
top_rows_overlap-ConsensusPartitionList-method
html
top_rows_overlap-dispatch html
top_rows_overlap-matrix-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cola' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cal_consensus_mat.cpp -o cal_consensus_mat.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pdist.cpp -o pdist.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o cola.dll tmp.def RcppExports.o cal_consensus_mat.o pdist.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/cola.buildbin-libdir/cola/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cola' as cola_1.4.1.zip
* DONE (cola)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'cola' successfully unpacked and MD5 sums checked