Tiphaine Martin
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/coMET |
| Branch: RELEASE_3_11 |
| Last Commit: ed93a9c |
| Last Changed Date: 2020-04-27 14:46:05 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:21 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE coMET PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 353/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| coMET 1.20.0 Tiphaine Martin
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: coMET |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/coMET_1.20.0.tar.gz && rm -rf coMET.buildbin-libdir && mkdir coMET.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=coMET.buildbin-libdir coMET_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL coMET_1.20.0.zip && rm coMET_1.20.0.tar.gz coMET_1.20.0.zip |
| StartedAt: 2020-10-16 19:36:42 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:40:57 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 255.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/coMET_1.20.0.tar.gz && rm -rf coMET.buildbin-libdir && mkdir coMET.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=coMET.buildbin-libdir coMET_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL coMET_1.20.0.zip && rm coMET_1.20.0.tar.gz coMET_1.20.0.zip
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install for i386
* installing *source* package 'coMET' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'coMET'
finding HTML links ... done
COSMIC_UCSC html
ChIPTF_ENCODE html
ClinVarCnv_UCSC html
ClinVarMain_UCSC html
CoreillCNV_UCSC html
DNAse_UCSC html
DNaseI_FANTOM html
DNaseI_RoadMap html
GAD_UCSC html
GWAScatalog_UCSC html
GeneReviews_UCSC html
HiCdata2matrix html
HistoneAll_UCSC html
HistoneOne_UCSC html
ISCA_UCSC html
TFBS_FANTOM html
bindingMotifsBiomart_ENSEMBL html
check.configVar html
check.configVar.cometlist html
check.format.mydata html
chrUCSC2ENSEMBL html
chromHMM_RoadMap html
chromatinHMMAll_UCSC html
chromatinHMMOne_UCSC html
coMET-package html
comet html
comet.list html
comet.web html
compute.cormatrix html
cpgIslands_UCSC html
cpgPvalue html
create.color.bar html
create.color.list html
create.color.list.large html
create.symbol.list html
create.symbol.list.large html
create.tracks.user html
create.tracks.web html
createList.trackUser html
datasets html
dgfootprints_RoadMap html
draw.legend html
draw.name.genes.web html
draw.name.tracks.web html
draw.plot.annotation html
draw.plot.axis.data html
draw.plot.comet html
draw.plot.comet.nopval html
draw.plot.comet.web html
draw.plot.cormatrix.plot html
draw.plot.grid.mydata html
draw.plot.grid.mydata.large html
draw.plot.grid.mydata.names html
draw.plot.grid.setup html
draw.plot.linesconnection html
draw.plot.mydata.ggbio html
eQTL html
eQTL_GTEx html
fix.values html
fix.values.generic html
fix.values.large html
gcContent_UCSC html
genesName_ENSEMBL html
genes_ENSEMBL html
imprintedGenes_GTEx html
interestGenes_ENSEMBL html
interestTranscript_ENSEMBL html
knownGenes_UCSC html
metQTL html
miRNATargetRegionsBiomart_ENSEMBL html
otherRegulatoryRegionsBiomart_ENSEMBL html
printPlot.comet html
printPlot.comet.nopval html
printPlot.comet.web html
psiQTL_GTEx html
read.config html
read.file.cormatrix html
read.file.mydata html
read.file.mydata.large html
refGenes_UCSC html
regulationBiomart_ENSEMBL html
regulatoryEvidenceBiomart_ENSEMBL html
regulatoryFeaturesBiomart_ENSEMBL html
regulatorySegmentsBiomart_ENSEMBL html
repeatMasker_UCSC html
retrieve.data html
segmentalDups_UCSC html
set.image.parameters html
snpBiomart_ENSEMBL html
snpLocations_UCSC html
structureBiomart_ENSEMBL html
transcript_ENSEMBL html
xenorefGenes_UCSC html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'coMET' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'coMET' as coMET_1.20.0.zip
* DONE (coMET)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'coMET' successfully unpacked and MD5 sums checked