Likun Wang
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/cisPath |
| Branch: RELEASE_3_11 |
| Last Commit: 5cb7de7 |
| Last Changed Date: 2020-04-27 14:33:08 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:58:13 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE cisPath PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 302/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| cisPath 1.28.0 Likun Wang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | [ OK ] | |
| Package: cisPath |
| Version: 1.28.0 |
| Command: rm -rf cisPath.buildbin-libdir && mkdir cisPath.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cisPath_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cisPath.buildbin-libdir |
| StartedAt: 2020-10-17 06:48:00 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 06:48:20 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 19.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: cisPath_1.28.0.tgz |
| PackageFileSize: 1006 KiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf cisPath.buildbin-libdir && mkdir cisPath.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cisPath_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cisPath.buildbin-libdir
###
##############################################################################
##############################################################################
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cisPath.buildbin-libdir cisPath_1.28.0.tar.gz'
>>>>>>>
* installing *source* package ‘cisPath’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c cisPath.cpp -o cisPath.o
cisPath.cpp:945:14: warning: explicitly assigning value of variable of type 'std::__1::string' (aka 'basic_string<char, char_traits<char>, allocator<char> >') to itself [-Wself-assign-overloaded]
Name = Name;
~~~~ ^ ~~~~
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cisPath.so cisPath.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/cisPath.buildbin-libdir/00LOCK-cisPath/00new/cisPath/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cisPath)
>>>>>>>
>>>>>>> FIXING LINKS FOR cisPath.buildbin-libdir/cisPath/libs/cisPath.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "cisPath.buildbin-libdir/cisPath/libs/cisPath.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "cisPath.buildbin-libdir/cisPath/libs/cisPath.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "cisPath.buildbin-libdir/cisPath/libs/cisPath.so"