Stian Lågstad
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/chimeraviz |
| Branch: RELEASE_3_11 |
| Last Commit: fd9266e |
| Last Changed Date: 2020-04-27 15:03:55 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:14 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE chimeraviz PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 277/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| chimeraviz 1.14.0 Stian Lågstad
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped |
| Package: chimeraviz |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/chimeraviz_1.14.0.tar.gz && rm -rf chimeraviz.buildbin-libdir && mkdir chimeraviz.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chimeraviz.buildbin-libdir chimeraviz_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL chimeraviz_1.14.0.zip && rm chimeraviz_1.14.0.tar.gz chimeraviz_1.14.0.zip |
| StartedAt: 2020-10-16 19:37:54 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:40:42 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 168.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/chimeraviz_1.14.0.tar.gz && rm -rf chimeraviz.buildbin-libdir && mkdir chimeraviz.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chimeraviz.buildbin-libdir chimeraviz_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL chimeraviz_1.14.0.zip && rm chimeraviz_1.14.0.tar.gz chimeraviz_1.14.0.zip
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install for i386
* installing *source* package 'chimeraviz' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'chimeraviz'
finding HTML links ... done
Fusion-class html
PartnerGene-class html
add_fusion_reads_alignment html
chimeraviz-internals-fusions_to_gene_label_data
html
chimeraviz-internals-fusions_to_link_data
html
chimeraviz-internals-scaleListToInterval
html
chimeraviz html
create_fusion_report html
decide_transcript_category html
down_shift html
downstream_partner_gene html
fetch_reads_from_fastq html
fusion_spanning_reads_count html
fusion_split_reads_count html
fusion_to_data_frame html
get_ensembl_ids html
get_fusion_by_chromosome html
get_fusion_by_gene_name html
get_fusion_by_id html
get_transcripts_ensembl_db html
import_aeron html
import_chimpipe html
import_defuse html
import_ericscript html
import_function_non_ucsc html
import_fusioncatcher html
import_fusionmap html
import_infusion html
import_jaffa html
import_oncofuse html
import_prada html
import_soapfuse html
import_squid html
import_starfusion html
partner_gene_ensembl_id html
partner_gene_junction_sequence html
plot_circle html
plot_fusion html
plot_fusion_reads html
plot_fusion_transcript html
plot_fusion_transcript_with_protein_domain
html
plot_fusion_transcripts_graph html
plot_transcripts html
raw_Homo_sapiens.GRCh37.74 html
raw_chimpipe html
raw_cytobandhg19 html
raw_cytobandhg38 html
raw_defuse html
raw_ericscript html
raw_fusion5267proteindomains html
raw_fusion5267reads html
raw_fusion5267readsBedGraph html
raw_fusioncatcher html
raw_fusionmap html
raw_infusion html
raw_jaffa html
raw_oncofuse html
raw_prada html
raw_soapfuse html
raw_starfusion html
select_transcript html
show-Fusion-method html
show-PartnerGene-method html
split_on_utr_and_add_feature html
upstream_partner_gene html
write_fusion_reference html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'chimeraviz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'chimeraviz' as chimeraviz_1.14.0.zip
* DONE (chimeraviz)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'chimeraviz' successfully unpacked and MD5 sums checked