Raffaele A Calogero
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/chimera |
| Branch: RELEASE_3_11 |
| Last Commit: e9ffbe3 |
| Last Changed Date: 2020-04-27 14:33:16 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:58:11 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE chimera PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 276/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| chimera 1.30.0 Raffaele A Calogero
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | [ OK ] | |
| Package: chimera |
| Version: 1.30.0 |
| Command: rm -rf chimera.buildbin-libdir && mkdir chimera.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh chimera_1.30.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R chimera.buildbin-libdir |
| StartedAt: 2020-10-17 06:46:24 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 06:47:31 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 67.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: chimera_1.30.0.tgz |
| PackageFileSize: 2.662 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf chimera.buildbin-libdir && mkdir chimera.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh chimera_1.30.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R chimera.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=chimera.buildbin-libdir chimera_1.30.0.tar.gz' >>>>>>> * installing *source* package ‘chimera’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c StarParser.cpp -o StarParser.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o chimera.so StarParser.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.11-bioc/meat/chimera.buildbin-libdir/00LOCK-chimera/00new/chimera/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (chimera) >>>>>>> >>>>>>> FIXING LINKS FOR chimera.buildbin-libdir/chimera/libs/chimera.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "chimera.buildbin-libdir/chimera/libs/chimera.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "chimera.buildbin-libdir/chimera/libs/chimera.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "chimera.buildbin-libdir/chimera/libs/chimera.so"