Henry Zhang
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/caOmicsV |
| Branch: RELEASE_3_11 |
| Last Commit: dcd3e5d |
| Last Changed Date: 2020-04-27 14:49:25 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:12 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE caOmicsV PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 230/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| caOmicsV 1.18.0 Henry Zhang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: caOmicsV |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/caOmicsV_1.18.0.tar.gz && rm -rf caOmicsV.buildbin-libdir && mkdir caOmicsV.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=caOmicsV.buildbin-libdir caOmicsV_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL caOmicsV_1.18.0.zip && rm caOmicsV_1.18.0.tar.gz caOmicsV_1.18.0.zip |
| StartedAt: 2020-10-16 17:33:27 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:34:41 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 74.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/caOmicsV_1.18.0.tar.gz && rm -rf caOmicsV.buildbin-libdir && mkdir caOmicsV.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=caOmicsV.buildbin-libdir caOmicsV_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL caOmicsV_1.18.0.zip && rm caOmicsV_1.18.0.tar.gz caOmicsV_1.18.0.zip
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install for i386
* installing *source* package 'caOmicsV' ...
** using staged installation
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'caOmicsV'
finding HTML links ... done
CA_OMICS_ENV html
CA_OMICS_NAME html
CA_OMICS_NA_STRING html
CNVDemoData html
RNA2miRNA html
RNASeq html
RNASeqDemoData html
bioMatrixLegend html
bioNetCircosPlot html
bioNetLegend html
biomatrixPlotDemoData html
bionetPlotDemoData html
caOmicsV-package html
convertToZScores html
drawBioNetNodeBackground html
eraseBioNetNode html
getBezierCurve html
getBioMatrixDataRowTop html
getBioMatrixPlotParameters html
getBioNetNodeLinkLine html
getBioNetParameters html
getBioNetPlotLocations html
getBioNetSamplePlotPosition html
getCaOmicsVColors html
getCaOmicsVPlotTypes html
getDefaultNaStrings html
getHeatmapColorScales html
getPlotDataSet html
getPlotOmicsData html
getPlotSampleData html
getPlotSummaryData html
getRelatedPlotData html
initializeBioMatrixPlot html
initializeBioNetCircos html
labelBioNetNodeNames html
linkBioNetNodes html
linkBioNetSamples html
methylDemoData html
miRNA html
miRNADemoData html
plotBioMatrix html
plotBioMatrixBars html
plotBioMatrixBinaryData html
plotBioMatrixCategoryData html
plotBioMatrixHeatmap html
plotBioMatrixRowNames html
plotBioMatrixSampleData html
plotBioMatrixSampleNames html
plotBioNetBars html
plotBioNetCircos html
plotBioNetHeatmap html
plotBioNetLines html
plotBioNetPoints html
plotBioNetPolygons html
plotHeatmapColorScale html
resetBioNetNodePlotAreaBoundary html
sampleDemoData html
setBioMatrixBaseCoordinates html
setBioMatrixPlotArea html
setBioMatrixPlotParameters html
setBioNetCircosBasePlotPositions html
setBioNetNodeLayout html
setBioNetPlotAreaBackground html
setBioNetPlotParameters html
setCaOmicsVColors html
setDefaultNaStrings html
showBioMatrixPlotLayout html
showBioNetNodesLayout html
showSupportedBioNetCircosPlotType html
sortClinicalData html
sortOmicsDataByColumn html
sortOmicsDataByRow html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'caOmicsV' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'caOmicsV' as caOmicsV_1.18.0.zip
* DONE (caOmicsV)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'caOmicsV' successfully unpacked and MD5 sums checked