Nuno Saraiva-Agostinho
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/cTRAP |
| Branch: RELEASE_3_11 |
| Last Commit: 3570b03 |
| Last Changed Date: 2020-08-17 13:06:31 -0400 (Mon, 17 Aug 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:24 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE cTRAP PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 404/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| cTRAP 1.6.1 Nuno Saraiva-Agostinho
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: cTRAP |
| Version: 1.6.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/cTRAP_1.6.1.tar.gz && rm -rf cTRAP.buildbin-libdir && mkdir cTRAP.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cTRAP.buildbin-libdir cTRAP_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL cTRAP_1.6.1.zip && rm cTRAP_1.6.1.tar.gz cTRAP_1.6.1.zip |
| StartedAt: 2020-10-16 18:33:30 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:35:08 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 97.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/cTRAP_1.6.1.tar.gz && rm -rf cTRAP.buildbin-libdir && mkdir cTRAP.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cTRAP.buildbin-libdir cTRAP_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL cTRAP_1.6.1.zip && rm cTRAP_1.6.1.tar.gz cTRAP_1.6.1.zip
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install for i386
* installing *source* package 'cTRAP' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cTRAP'
finding HTML links ... done
ENCODEmetadata html
GCT-class html
analyseDrugSetEnrichment html
as.table.referenceComparison html
cTRAP html
calculateCellLineMean html
checkColnames html
chunkVector html
closeOpenHandles html
cmapMetadata html
cmapPerturbationsCompounds html
cmapPerturbationsKD html
compareAgainstReference html
compareAgainstReferencePerMethod html
compareQuantile html
convertENSEMBLtoGeneSymbols html
correlateAgainstReference html
counts html
diffExprStat html
downloadENCODEknockdownMetadata html
downloadIfNotFound html
filterCMapMetadata html
fix.datatypes html
getCMapConditions html
getCMapPerturbationTypes html
getENCODEcontrols html
listExpressionDrugSensitivityAssociation
html
loadCMapData html
loadCMapZscores html
loadCTRPgeneExpression html
loadDrugDescriptors html
loadENCODEsample html
loadENCODEsamples html
loadExpressionDrugSensitivityAssociation
html
loadNCI60drugSensitivity html
matchStatsWithDrugSetsID html
parseCMapID html
performDifferentialExpression html
performGSEA html
performGSEAagainstReference html
plot.perturbationChanges html
plot.referenceComparison html
plotDrugSetEnrichment html
plotESplot html
plotGSEA html
plotMetricDistribution html
plotSingleCorr html
plotTargetingDrugsVSsimilarPerturbations
html
predictTargetingDrugs html
prepareCMapPerturbations html
prepareDrugSets html
prepareENCODEgeneExpression html
prepareExpressionDrugSensitivityAssociation
html
prepareGSEAgenesets html
print.similarPerturbations html
processByChunks html
processIds html
rankColumns html
rankSimilarPerturbations html
readGctxIds html
readGctxMeta html
stripStr html
subsetToIds html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cTRAP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cTRAP' as cTRAP_1.6.1.zip
* DONE (cTRAP)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'cTRAP' successfully unpacked and MD5 sums checked