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BUILD BIN report for biomformat on tokay2

This page was generated on 2020-10-17 11:56:10 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE biomformat PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 173/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biomformat 1.16.0
Paul J. McMurdie
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/biomformat
Branch: RELEASE_3_11
Last Commit: d2596cd
Last Changed Date: 2020-04-27 14:53:04 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: biomformat
Version: 1.16.0
Command: rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.16.0.tar.gz
StartedAt: 2020-10-17 09:57:06 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 09:58:03 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 56.5 seconds
RetCode: 0
Status:  OK  
PackageFile: biomformat_1.16.0.zip
PackageFileSize: 480.6 KiB

Command output

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###
### Running command:
###
###   rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.16.0.tar.gz
###
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install for i386

* installing *source* package 'biomformat' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'nrow' from package 'base' in package 'biomformat'
Creating a generic function for 'ncol' from package 'base' in package 'biomformat'
Creating a generic function for 'rownames' from package 'base' in package 'biomformat'
Creating a generic function for 'colnames' from package 'base' in package 'biomformat'
** help
*** installing help indices
  converting help for package 'biomformat'
    finding HTML links ... done
    biom-class                              html  
    biom-methods                            html  
    finding level-2 HTML links ... done

    biom-package                            html  
    biom_data-methods                       html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpw5iQD6/R.INSTALL134431cb7ad3/biomformat/man/biom_data-methods.Rd:46: missing link 'plyr-package'
    biom_shape-methods                      html  
    colnames-methods                        html  
    header-methods                          html  
    make_biom                               html  
    matrix_element_type-methods             html  
    ncol-methods                            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpw5iQD6/R.INSTALL134431cb7ad3/biomformat/man/ncol-methods.Rd:6: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpw5iQD6/R.INSTALL134431cb7ad3/biomformat/man/ncol-methods.Rd:19: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpw5iQD6/R.INSTALL134431cb7ad3/biomformat/man/ncol-methods.Rd:31: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
    nrow-methods                            html  
    observation_metadata-methods            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpw5iQD6/R.INSTALL134431cb7ad3/biomformat/man/observation_metadata-methods.Rd:30: missing link 'plyr-package'
    read_biom                               html  
    read_hdf5_biom                          html  
    rownames-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpw5iQD6/R.INSTALL134431cb7ad3/biomformat/man/rownames-methods.Rd:6: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpw5iQD6/R.INSTALL134431cb7ad3/biomformat/man/rownames-methods.Rd:19: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpw5iQD6/R.INSTALL134431cb7ad3/biomformat/man/rownames-methods.Rd:31: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
    sample_metadata-methods                 html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpw5iQD6/R.INSTALL134431cb7ad3/biomformat/man/sample_metadata-methods.Rd:30: missing link 'plyr-package'
    show-methods                            html  
    write_biom                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biomformat' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biomformat' as biomformat_1.16.0.zip
* DONE (biomformat)