Eivind Valen
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/amplican |
| Branch: RELEASE_3_11 |
| Last Commit: 63bd0b9 |
| Last Changed Date: 2020-07-03 10:24:14 -0400 (Fri, 03 Jul 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:04 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE amplican PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 51/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| amplican 1.10.1 Eivind Valen
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: amplican |
| Version: 1.10.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/amplican_1.10.1.tar.gz && rm -rf amplican.buildbin-libdir && mkdir amplican.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=amplican.buildbin-libdir amplican_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL amplican_1.10.1.zip && rm amplican_1.10.1.tar.gz amplican_1.10.1.zip |
| StartedAt: 2020-10-16 19:03:29 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:06:09 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 159.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/amplican_1.10.1.tar.gz && rm -rf amplican.buildbin-libdir && mkdir amplican.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=amplican.buildbin-libdir amplican_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL amplican_1.10.1.zip && rm amplican_1.10.1.tar.gz amplican_1.10.1.zip
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install for i386
* installing *source* package 'amplican' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bezier.cpp -o bezier.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o amplican.dll tmp.def RcppExports.o bezier.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/amplican.buildbin-libdir/00LOCK-amplican/00new/amplican/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'amplican'
finding HTML links ... done
AlignmentsExperimentSet-class html
finding level-2 HTML links ... done
alphabetQuality html
amplican html
amplicanAlign html
amplicanConsensus html
amplicanFilter html
amplicanMap html
amplicanNormalize html
amplicanOverlap html
amplicanPipeline html
amplicanPipelineConservative html
amplicanReport html
amplicanSummarize html
amplican_print_reads html
assignedCount html
barcodeData-set html
barcodeData html
checkConfigFile html
checkFileWriteAccess html
checkPrimers html
checkTarget html
cigarsToEvents html
comb_along html
cumsumw html
decode html
defGR html
experimentData-set html
experimentData html
extractEvents html
findEOP html
findLQR html
findPD html
flipRanges html
fwdReads-set html
fwdReads html
fwdReadsType-set html
fwdReadsType html
geom_bezier html
getEventInfo html
getEvents html
get_amplicon html
get_left_primer html
get_right_primer html
goodAvgQuality html
goodBaseQuality html
lookupAlignment html
makeAlignment html
metaplot_deletions html
metaplot_insertions html
metaplot_mismatches html
pairToEvents html
plot_amplicon html
plot_cuts html
plot_deletions html
plot_height html
plot_heterogeneity html
plot_insertions html
plot_mismatches html
plot_variants html
readCounts-set html
readCounts html
revComp html
rveReads-set html
rveReads html
rveReadsType-set html
rveReadsType html
unassignedCount html
unassignedData-set html
unassignedData html
upperGroups html
writeAlignments html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'amplican' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bezier.cpp -o bezier.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o amplican.dll tmp.def RcppExports.o bezier.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/amplican.buildbin-libdir/amplican/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'amplican' as amplican_1.10.1.zip
* DONE (amplican)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'amplican' successfully unpacked and MD5 sums checked