Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQRSTUVW[X]YZ

INSTALL report for XINA on tokay2

This page was generated on 2020-10-17 11:58:00 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE XINA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1895/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
XINA 1.6.0
Lang Ho Lee
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/XINA
Branch: RELEASE_3_11
Last Commit: b9fd1a6
Last Changed Date: 2020-04-27 15:19:09 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: XINA
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/XINA_1.6.0.tar.gz && rm -rf XINA.buildbin-libdir && mkdir XINA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=XINA.buildbin-libdir XINA_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL XINA_1.6.0.zip && rm XINA_1.6.0.tar.gz XINA_1.6.0.zip
StartedAt: 2020-10-16 17:33:05 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:33:59 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 54.0 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/XINA_1.6.0.tar.gz && rm -rf XINA.buildbin-libdir && mkdir XINA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=XINA.buildbin-libdir XINA_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL XINA_1.6.0.zip && rm XINA_1.6.0.tar.gz XINA_1.6.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  642k  100  642k    0     0  9702k      0 --:--:-- --:--:-- --:--:-- 10.6M

install for i386

* installing *source* package 'XINA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'XINA'
    finding HTML links ... done
    add_legend                              html  
    alluvial_enriched                       html  
    alluvial_enrichment_tests               html  
    calculate_centrality_scores             html  
    default_size                            html  
    draw_alluvial_plot                      html  
    example_clusters                        html  
    extract_data_column                     html  
    find_similar_clusters                   html  
    generate_count_table                    html  
    generate_superset                       html  
    get_color_for_nodes                     html  
    get_colors                              html  
    get_comigrations_by_name                html  
    get_condition_biased_comigrations       html  
    get_layout                              html  
    get_mTOR_proteins                       html  
    get_random_data                         html  
    get_stats                               html  
    get_theme_blank                         html  
    get_unknown_ppi_nodes                   html  
    gn                                      html  
    gn_desc                                 html  
    hprd_ppi                                html  
    length2                                 html  
    load_previous_results                   html  
    make_random_xina_data                   html  
    mutate_colors                           html  
    organize_clusters                       html  
    plot_NA                                 html  
    plot_clusters                           html  
    plot_clusters_all                       html  
    plot_condition_compositions             html  
    plot_enrichment_results                 html  
    rank_centrality                         html  
    string_example                          html  
    xina_analysis                           html  
    xina_clustering                         html  
    xina_enrichment                         html  
    xina_plot_all                           html  
    xina_plot_bycluster                     html  
    xina_plot_single                        html  
    xina_result_example                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'XINA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'XINA' as XINA_1.6.0.zip
* DONE (XINA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'XINA' successfully unpacked and MD5 sums checked