Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

BUILD BIN report for TurboNorm on tokay2

This page was generated on 2020-10-16 11:59:06 -0400 (Fri, 16 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE TurboNorm PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1846/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TurboNorm 1.36.0
Maarten van Iterson
Snapshot Date: 2020-10-15 14:40:03 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/TurboNorm
Branch: RELEASE_3_11
Last Commit: b09fa5a
Last Changed Date: 2020-04-27 14:23:54 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: TurboNorm
Version: 1.36.0
Command: rm -rf TurboNorm.buildbin-libdir && mkdir TurboNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TurboNorm.buildbin-libdir TurboNorm_1.36.0.tar.gz
StartedAt: 2020-10-16 11:32:02 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 11:32:57 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 54.9 seconds
RetCode: 0
Status:  OK  
PackageFile: TurboNorm_1.36.0.zip
PackageFileSize: 2.062 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf TurboNorm.buildbin-libdir && mkdir TurboNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TurboNorm.buildbin-libdir TurboNorm_1.36.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'TurboNorm' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rinit.c -o Rinit.o
Rinit.c:8:40: warning: missing braces around initializer [-Wmissing-braces]
 static const R_CMethodDef cMethods[] = {
                                        ^
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binners.c -o binners.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o TurboNorm.dll tmp.def Rinit.o binners.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/TurboNorm.buildbin-libdir/00LOCK-TurboNorm/00new/TurboNorm/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TurboNorm'
    finding HTML links ... done
    methylation                             html  
    normalize.pspline                       html  
    panel.pspline                           html  
    pspline                                 html  
    turbonorm-package                       html  
    turbotrend                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TurboNorm' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rinit.c -o Rinit.o
Rinit.c:8:40: warning: missing braces around initializer [-Wmissing-braces]
 static const R_CMethodDef cMethods[] = {
                                        ^
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binners.c -o binners.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o TurboNorm.dll tmp.def Rinit.o binners.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/TurboNorm.buildbin-libdir/TurboNorm/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TurboNorm' as TurboNorm_1.36.0.zip
* DONE (TurboNorm)