Multiple platform build/check report for BioC 3.11 - CHECK report for TFARM on machv2

Package: TFARM

Version: 1.10.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TFARM.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TFARM_1.10.0.tar.gz

StartedAt: 2020-10-17 05:51:20 -0400 (Sat, 17 Oct 2020)

EndedAt: 2020-10-17 05:54:10 -0400 (Sat, 17 Oct 2020)

EllapsedTime: 170.6 seconds

RetCode: 0

Status: OK

CheckDir: TFARM.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TFARM.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TFARM_1.10.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/TFARM.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TFARM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TFARM’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TFARM’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
rulesTF0 6.902   0.06   6.968
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL TFARM
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘TFARM’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TFARM)

name	user	system	elapsed
DELTA	0.008	0.002	0.009
IComp	0.048	0.008	0.057
IMP	0.001	0.002	0.003
IMP_Z	0.001	0.001	0.002
IPCA	0.017	0.003	0.019
I_c_2	0.002	0.002	0.003
MCF7_chr1	0.097	0.006	0.102
TF_Imp	0.002	0.001	0.003
distribViz	0.024	0.005	0.029
heatI	0.085	0.011	0.098
imp_FOSL2	0.002	0.001	0.003
items	0.000	0.000	0.001
itemset	0.002	0.000	0.002
p_TFs	0.001	0.001	0.002
presAbs	0.477	0.016	0.494
r_FOSL2	0.002	0.002	0.003
r_TEAD4	0.003	0.002	0.004
r_noFOSL2	0.002	0.002	0.003
rulesGen	0.652	0.018	0.672
rulesTF	0.212	0.007	0.219
rulesTF0	6.902	0.060	6.968

CHECK report for TFARM on machv2

Summary

Command output

Installation output

Tests output

Example timings