Marcel Ramos
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/TCGAutils |
| Branch: RELEASE_3_11 |
| Last Commit: c6301f3 |
| Last Changed Date: 2020-09-14 14:09:15 -0400 (Mon, 14 Sep 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:55 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE TCGAutils PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1786/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TCGAutils 1.8.1 Marcel Ramos
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: TCGAutils |
| Version: 1.8.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/TCGAutils_1.8.1.tar.gz && rm -rf TCGAutils.buildbin-libdir && mkdir TCGAutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAutils.buildbin-libdir TCGAutils_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL TCGAutils_1.8.1.zip && rm TCGAutils_1.8.1.tar.gz TCGAutils_1.8.1.zip |
| StartedAt: 2020-10-16 19:05:59 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:07:11 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 71.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/TCGAutils_1.8.1.tar.gz && rm -rf TCGAutils.buildbin-libdir && mkdir TCGAutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAutils.buildbin-libdir TCGAutils_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL TCGAutils_1.8.1.zip && rm TCGAutils_1.8.1.tar.gz TCGAutils_1.8.1.zip
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install for i386
* installing *source* package 'TCGAutils' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'TCGAutils'
finding HTML links ... done
ID-translation html
TCGAbarcode html
TCGAbiospec html
TCGAprimaryTumors html
finding level-2 HTML links ... done
TCGAsampleSelect html
TCGAutils-package html
builds html
clinicalNames html
curatedTCGAData-helpers html
diseaseCodes html
findGRangesCols html
generateMap html
getFileName html
hidden-helpers html
imputeAssay html
makeGRangesListFromCopyNumber html
makeGRangesListFromExonFiles html
makeSummarizedExperimentFromGISTIC html
mergeColData html
oncoPrintTCGA html
sampleTypes html
simplifyTCGA html
trimColData html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TCGAutils' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCGAutils' as TCGAutils_1.8.1.zip
* DONE (TCGAutils)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'TCGAutils' successfully unpacked and MD5 sums checked