Xi Wang
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/SeqGSEA |
| Branch: RELEASE_3_11 |
| Last Commit: 506cfa1 |
| Last Changed Date: 2020-04-27 14:34:05 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:47 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE SeqGSEA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1630/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SeqGSEA 1.28.0 Xi Wang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: SeqGSEA |
| Version: 1.28.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SeqGSEA_1.28.0.tar.gz && rm -rf SeqGSEA.buildbin-libdir && mkdir SeqGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SeqGSEA.buildbin-libdir SeqGSEA_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SeqGSEA_1.28.0.zip && rm SeqGSEA_1.28.0.tar.gz SeqGSEA_1.28.0.zip |
| StartedAt: 2020-10-16 17:42:44 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:44:14 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 89.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SeqGSEA_1.28.0.tar.gz && rm -rf SeqGSEA.buildbin-libdir && mkdir SeqGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SeqGSEA.buildbin-libdir SeqGSEA_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SeqGSEA_1.28.0.zip && rm SeqGSEA_1.28.0.tar.gz SeqGSEA_1.28.0.zip
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install for i386
* installing *source* package 'SeqGSEA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
** help
*** installing help indices
converting help for package 'SeqGSEA'
finding HTML links ... done
DENBStat4GSEA html
DENBStatPermut4GSEA html
DENBTest html
DEpermutePval html
DEscore html
DSpermute4GSEA html
DSpermutePval html
DSresultExonTable html
DSresultGeneTable html
GSEAresultTable html
GSEnrichAnalyze html
GS_example html
RCS_example html
ReadCountSet-class html
finding level-2 HTML links ... done
SeqGSEA-package html
SeqGeneSet-class html
calES html
calES.perm html
convertEnsembl2Symbol html
convertSymbol2Ensembl html
counts-methods html
estiExonNBstat html
estiGeneNBstat html
exonID html
exonTestability html
geneID html
geneList html
genePermuteScore html
geneScore html
geneSetDescs html
geneSetNames html
geneSetSize html
geneTestability html
genpermuteMat html
getGeneCount html
label html
loadExonCountData html
loadGenesets html
newGeneSets html
newReadCountSet html
normES html
normFactor html
plotES html
plotGeneScore html
plotSig html
plotSigGeneSet html
rankCombine html
runDESeq html
runSeqGSEA html
scoreNormalization html
signifES html
size html
subsetByGenes html
topDEGenes html
topDSExons html
topDSGenes html
topGeneSets html
writeScores html
writeSigGeneSet html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
** testing if installed package can be loaded from final location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SeqGSEA' ...
** testing if installed package can be loaded
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
version 3.13. Please use DESeq2
* MD5 sums
packaged installation of 'SeqGSEA' as SeqGSEA_1.28.0.zip
* DONE (SeqGSEA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SeqGSEA' successfully unpacked and MD5 sums checked