Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:44 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE SamSPECTRAL PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1571/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
SamSPECTRAL 1.42.0 Habil
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: SamSPECTRAL |
Version: 1.42.0 |
Command: rm -rf SamSPECTRAL.buildbin-libdir && mkdir SamSPECTRAL.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SamSPECTRAL.buildbin-libdir SamSPECTRAL_1.42.0.tar.gz |
StartedAt: 2020-10-17 11:34:29 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 11:35:00 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 31.0 seconds |
RetCode: 0 |
Status: OK |
PackageFile: SamSPECTRAL_1.42.0.zip |
PackageFileSize: 924 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SamSPECTRAL.buildbin-libdir && mkdir SamSPECTRAL.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SamSPECTRAL.buildbin-libdir SamSPECTRAL_1.42.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'SamSPECTRAL' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rinit.c -o Rinit.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c conductance_computation.c -o conductance_computation.o conductance_computation.c: In function 'conductance_computation': conductance_computation.c:155:17: warning: variable 'repres_ind' set but not used [-Wunused-but-set-variable] int *density, *repres_ind; ^~~~~~~~~~ conductance_computation.c:155:7: warning: variable 'density' set but not used [-Wunused-but-set-variable] int *density, *repres_ind; ^~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c maximum_of_rows.c -o maximum_of_rows.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o SamSPECTRAL.dll tmp.def Rinit.o conductance_computation.o maximum_of_rows.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/SamSPECTRAL.buildbin-libdir/00LOCK-SamSPECTRAL/00new/SamSPECTRAL/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SamSPECTRAL' finding HTML links ... done Building_Communities html Civilized_Spectral_Clustering html Conductance_Calculation html Connecting html SamSPECTRAL-package html SamSPECTRAL html check.SamSPECTRAL.input html eigen.values.10 html eigen.values.1000 html kneepointDetection html small html stmFSC html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SamSPECTRAL' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rinit.c -o Rinit.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c conductance_computation.c -o conductance_computation.o conductance_computation.c: In function 'conductance_computation': conductance_computation.c:155:17: warning: variable 'repres_ind' set but not used [-Wunused-but-set-variable] int *density, *repres_ind; ^~~~~~~~~~ conductance_computation.c:155:7: warning: variable 'density' set but not used [-Wunused-but-set-variable] int *density, *repres_ind; ^~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c maximum_of_rows.c -o maximum_of_rows.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o SamSPECTRAL.dll tmp.def Rinit.o conductance_computation.o maximum_of_rows.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'SamSPECTRAL' as SamSPECTRAL_1.42.0.zip * DONE (SamSPECTRAL)