Xiuwen Zheng
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/SNPRelate |
| Branch: RELEASE_3_11 |
| Last Commit: 4998105 |
| Last Changed Date: 2020-04-27 14:42:52 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:55:48 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE SNPRelate PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1694/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SNPRelate 1.22.0 Xiuwen Zheng
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: SNPRelate |
| Version: 1.22.0 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL SNPRelate |
| StartedAt: 2020-10-16 16:08:13 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 16:08:40 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 26.8 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL SNPRelate ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘SNPRelate’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c ConvToGDS.cpp -o ConvToGDS.o gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c R_SNPRelate.c -o R_SNPRelate.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c SNPRelate.cpp -o SNPRelate.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c ThreadPool.cpp -o ThreadPool.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c dGenGWAS.cpp -o dGenGWAS.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c dVect.cpp -o dVect.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c genBeta.cpp -o genBeta.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c genEIGMIX.cpp -o genEIGMIX.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c genFst.cpp -o genFst.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c genHWE.cpp -o genHWE.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c genIBD.cpp -o genIBD.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c genIBS.cpp -o genIBS.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c genKING.cpp -o genKING.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c genLD.cpp -o genLD.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c genPCA.cpp -o genPCA.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I. -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c genSlideWin.cpp -o genSlideWin.o g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o SNPRelate.so ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lpthread -L/home/biocbuild/bbs-3.11-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.11-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-SNPRelate/00new/SNPRelate/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SNPRelate)