Neil Ari Wijetunga
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/SMITE |
| Branch: RELEASE_3_11 |
| Last Commit: 28365aa |
| Last Changed Date: 2020-04-27 14:54:26 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:50 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE SMITE PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1687/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SMITE 1.16.0 Neil Ari Wijetunga
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: SMITE |
| Version: 1.16.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SMITE_1.16.0.tar.gz && rm -rf SMITE.buildbin-libdir && mkdir SMITE.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SMITE.buildbin-libdir SMITE_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SMITE_1.16.0.zip && rm SMITE_1.16.0.tar.gz SMITE_1.16.0.zip |
| StartedAt: 2020-10-16 19:30:03 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:31:43 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 100.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SMITE_1.16.0.tar.gz && rm -rf SMITE.buildbin-libdir && mkdir SMITE.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SMITE.buildbin-libdir SMITE_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SMITE_1.16.0.zip && rm SMITE_1.16.0.tar.gz SMITE_1.16.0.zip
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install for i386
* installing *source* package 'SMITE' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SMITE'
finding HTML links ... done
Reactome.Symbol.Igraph html
SMITE-package html
addShadowText html
annotateExpression html
annotateModification html
convertGeneIds html
curated_expression html
extractExpression html
extractGOseq html
extractModification html
extractModules html
extractScores html
genes_for_conversiontest html
hg19_gene_bed html
highScores html
histone_h3k4me1 html
makePvalueAnnotation html
makePvalueObject html
methylationdata html
normalizePval html
plotCompareScores html
plotDensityPval html
plotModule html
removeModification html
runBioNet html
runGOseq html
runSpinglass html
scorePval html
stoufferTest html
test_annotation_score_data html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SMITE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SMITE' as SMITE_1.16.0.zip
* DONE (SMITE)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SMITE' successfully unpacked and MD5 sums checked