Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

BUILD report for RcwlPipelines on celaya2

This page was generated on 2020-01-16 13:53:38 -0500 (Thu, 16 Jan 2020).

Package 1386/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RcwlPipelines 1.3.0
Qiang Hu
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/RcwlPipelines
Branch: master
Last Commit: fa0f3bc
Last Changed Date: 2019-10-29 13:43:31 -0500 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 ...NOT SUPPORTED...
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ OK ] OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RcwlPipelines
Version: 1.3.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RcwlPipelines
StartedAt: 2020-01-16 00:35:55 -0500 (Thu, 16 Jan 2020)
EndedAt: 2020-01-16 00:37:13 -0500 (Thu, 16 Jan 2020)
EllapsedTime: 77.7 seconds
RetCode: 0
Status:  OK 
PackageFile: RcwlPipelines_1.3.0.tar.gz
PackageFileSize: 1.05 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RcwlPipelines
###
##############################################################################
##############################################################################


* checking for file ‘RcwlPipelines/DESCRIPTION’ ... OK
* preparing ‘RcwlPipelines’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘RcwlPipelines_1.3.0.tar.gz’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘RcwlPipelines/inst/GATK4/gatk4-data-processing/processing-for-variant-discovery-gatk4.b37.wgs.inputs.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘RcwlPipelines/inst/GATK4/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘RcwlPipelines/inst/GATK4/gatk4-data-processing/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.local.json’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘RcwlPipelines/inst/GATK4/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4.hg38.inputs.local.json’