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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RchyOptimyx_2.28.0.tar.gz && rm -rf RchyOptimyx.buildbin-libdir && mkdir RchyOptimyx.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RchyOptimyx.buildbin-libdir RchyOptimyx_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RchyOptimyx_2.28.0.zip && rm RchyOptimyx_2.28.0.tar.gz RchyOptimyx_2.28.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  360k  100  360k    0     0  5862k      0 --:--:-- --:--:-- --:--:-- 6678k

install for i386

* installing *source* package 'RchyOptimyx' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RchyOptimyx.cpp -o RchyOptimyx.o
In file included from graehl/graph.h:279,
                 from RchyOptimyx.cpp:13:
graehl/kbest.h: In function 'void buildSidetracksHeap(int, int)':
graehl/kbest.h:322:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
   } else
     ^~~~
graehl/kbest.h:324:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
    pathGraph[state] = newTreeHeapAdd(prev, pathGraph[state]);
    ^~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c dataRead.cpp -o dataRead.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c mystring.cpp -o mystring.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c numberGenerator.cpp -o numberGenerator.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o RchyOptimyx.dll tmp.def RchyOptimyx.o dataRead.o mystring.o numberGenerator.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/RchyOptimyx.buildbin-libdir/00LOCK-RchyOptimyx/00new/RchyOptimyx/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'merge' in package 'RchyOptimyx'
** help
*** installing help indices
  converting help for package 'RchyOptimyx'
    finding HTML links ... done
    HIVData                                 html  
    RchyOptimyx-package                     html  
    RchyOptimyx                             html  
    merge                                   html  
    plot                                    html  
    summary-methods                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RchyOptimyx' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RchyOptimyx.cpp -o RchyOptimyx.o
In file included from graehl/graph.h:279,
                 from RchyOptimyx.cpp:13:
graehl/kbest.h: In function 'void buildSidetracksHeap(int, int)':
graehl/kbest.h:322:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
   } else
     ^~~~
graehl/kbest.h:324:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
    pathGraph[state] = newTreeHeapAdd(prev, pathGraph[state]);
    ^~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c dataRead.cpp -o dataRead.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c mystring.cpp -o mystring.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c numberGenerator.cpp -o numberGenerator.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o RchyOptimyx.dll tmp.def RchyOptimyx.o dataRead.o mystring.o numberGenerator.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RchyOptimyx' as RchyOptimyx_2.28.0.zip
* DONE (RchyOptimyx)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'RchyOptimyx' successfully unpacked and MD5 sums checked