Martin Morgan
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/RaggedExperiment |
| Branch: RELEASE_3_11 |
| Last Commit: e716e90 |
| Last Changed Date: 2020-04-27 15:06:56 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:32 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE RaggedExperiment PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1410/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RaggedExperiment 1.12.0 Martin Morgan
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: RaggedExperiment |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RaggedExperiment_1.12.0.tar.gz && rm -rf RaggedExperiment.buildbin-libdir && mkdir RaggedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RaggedExperiment.buildbin-libdir RaggedExperiment_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RaggedExperiment_1.12.0.zip && rm RaggedExperiment_1.12.0.tar.gz RaggedExperiment_1.12.0.zip |
| StartedAt: 2020-10-16 18:15:44 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:16:26 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 42.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RaggedExperiment_1.12.0.tar.gz && rm -rf RaggedExperiment.buildbin-libdir && mkdir RaggedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RaggedExperiment.buildbin-libdir RaggedExperiment_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RaggedExperiment_1.12.0.zip && rm RaggedExperiment_1.12.0.tar.gz RaggedExperiment_1.12.0.zip
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install for i386
* installing *source* package 'RaggedExperiment' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RaggedExperiment'
finding HTML links ... done
RaggedExperiment-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:117: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:141: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:142: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:143: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:152: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:154: file link 'exonsBy' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:167: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:172: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:173: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:182: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:206: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:206: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:207: file link 'Views' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:207: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:207: file link 'IRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:208: file link 'ViewsList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:209: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:213: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:215: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:280: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:280: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:281: file link 'Views' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:281: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:281: file link 'IRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:282: file link 'ViewsList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:283: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:287: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:289: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:415: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:429: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
RaggedExperiment-package html
assay-functions html
coerce-functions html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RaggedExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RaggedExperiment' as RaggedExperiment_1.12.0.zip
* DONE (RaggedExperiment)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'RaggedExperiment' successfully unpacked and MD5 sums checked