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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RProtoBufLib.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RProtoBufLib_2.0.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RProtoBufLib/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RProtoBufLib’ version ‘2.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RProtoBufLib’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
  BSD_3_clause
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RProtoBufLib
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘RProtoBufLib’ ...
** using staged installation
checking for gcc... clang -mmacosx-version-min=10.13
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -mmacosx-version-min=10.13 accepts -g... yes
checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++11 accepts -g... yes
untarring protobuf ...
building protobuf...
checking whether to enable maintainer-specific portions of Makefiles... yes
checking build system type... x86_64-apple-darwin18.7.0
checking host system type... x86_64-apple-darwin18.7.0
checking target system type... x86_64-apple-darwin18.7.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for gawk... no
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checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '505' is supported by ustar format... yes
checking whether GID '20' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... (cached) yes
checking for gcc... clang -mmacosx-version-min=10.13
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -mmacosx-version-min=10.13 accepts -g... yes
checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed
checking whether clang -mmacosx-version-min=10.13 understands -c and -o together... rm: conftest.dSYM: is a directory
yes
checking for style of include used by make... GNU
checking dependency style of clang -mmacosx-version-min=10.13... gcc3
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++11 accepts -g... yes
checking dependency style of clang++ -mmacosx-version-min=10.13 -std=gnu++11... gcc3
checking how to run the C preprocessor... clang -mmacosx-version-min=10.13 -E
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checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking dependency style of gcc... (cached) gcc3
checking how to run the C preprocessor... gcc -E
checking how to run the C++ preprocessor... clang++ -mmacosx-version-min=10.13 -std=gnu++11 -E
checking for g++... g++
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... yes
checking dependency style of g++... (cached) gcc3
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
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checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
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checking minix/config.h usability... no
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checking whether it is safe to define __EXTENSIONS__... yes
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checking whether we are using the GNU Objective C compiler... yes
checking whether gcc accepts -g... yes
checking dependency style of gcc... gcc3
checking C++ compiler flags...... use user-supplied: -Wall -g -O2
checking whether __SUNPRO_CC is declared... no
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checking for fgrep... /usr/bin/grep -F
checking for ld used by clang -mmacosx-version-min=10.13... /Library/Developer/CommandLineTools/usr/bin/ld
checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 196608
checking how to convert x86_64-apple-darwin18.7.0 file names to x86_64-apple-darwin18.7.0 format... func_convert_file_noop
checking how to convert x86_64-apple-darwin18.7.0 file names to toolchain format... func_convert_file_noop
checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
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checking command to parse /usr/bin/nm -B output from clang -mmacosx-version-min=10.13 object... ok
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checking how to truncate binary pipes... /bin/dd bs=4096 count=1
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checking for -force_load linker flag... yes
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checking for objdir... .libs
checking if clang -mmacosx-version-min=10.13 supports -fno-rtti -fno-exceptions... yes
checking for clang -mmacosx-version-min=10.13 option to produce PIC... -fno-common -DPIC
checking if clang -mmacosx-version-min=10.13 PIC flag -fno-common -DPIC works... yes
checking if clang -mmacosx-version-min=10.13 static flag -static works... no
checking if clang -mmacosx-version-min=10.13 supports -c -o file.o... yes
checking if clang -mmacosx-version-min=10.13 supports -c -o file.o... (cached) yes
checking whether the clang -mmacosx-version-min=10.13 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin18.7.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... clang++ -mmacosx-version-min=10.13 -std=gnu++11 -E
checking for ld used by clang++ -mmacosx-version-min=10.13 -std=gnu++11... /Library/Developer/CommandLineTools/usr/bin/ld
checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no
checking whether the clang++ -mmacosx-version-min=10.13 -std=gnu++11 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes
checking for clang++ -mmacosx-version-min=10.13 -std=gnu++11 option to produce PIC... -fno-common -DPIC
checking if clang++ -mmacosx-version-min=10.13 -std=gnu++11 PIC flag -fno-common -DPIC works... yes
checking if clang++ -mmacosx-version-min=10.13 -std=gnu++11 static flag -static works... no
checking if clang++ -mmacosx-version-min=10.13 -std=gnu++11 supports -c -o file.o... yes
checking if clang++ -mmacosx-version-min=10.13 -std=gnu++11 supports -c -o file.o... (cached) yes
checking whether the clang++ -mmacosx-version-min=10.13 -std=gnu++11 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin18.7.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether the linker supports version scripts... no
checking for ANSI C header files... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
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checking zlib version... ok (1.2.0.4 or later)
checking for library containing zlibVersion... -lz
checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++11 supports C++11 features by default... yes
checking whether -latomic is needed... no
checking whether clang -mmacosx-version-min=10.13 is Clang... yes
checking whether Clang needs flag to prevent "argument unused" warning when linking with -pthread... no
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
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checking the location of hash_map... <unordered_map>
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating protobuf-lite.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in third_party/googletest (/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/protobuf-3.10.0/third_party/googletest)
configure: WARNING: no configuration information is in third_party/googletest
Making install in .
make[2]: Nothing to be done for `install-exec-am'.
 ./install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/lib/pkgconfig'
 /usr/bin/install -c -m 644 protobuf-lite.pc '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/lib/pkgconfig'
Making install in src
  CXX      google/protobuf/stubs/bytestream.lo
  CXX      google/protobuf/stubs/common.lo
  CXX      google/protobuf/stubs/int128.lo
  CXX      google/protobuf/io/io_win32.lo
  CXX      google/protobuf/stubs/status.lo
  CXX      google/protobuf/stubs/statusor.lo
  CXX      google/protobuf/stubs/stringpiece.lo
  CXX      google/protobuf/stubs/stringprintf.lo
  CXX      google/protobuf/stubs/structurally_valid.lo
  CXX      google/protobuf/stubs/strutil.lo
  CXX      google/protobuf/stubs/time.lo
  CXX      google/protobuf/any_lite.lo
  CXX      google/protobuf/arena.lo
  CXX      google/protobuf/extension_set.lo
  CXX      google/protobuf/generated_enum_util.lo
  CXX      google/protobuf/generated_message_util.lo
  CXX      google/protobuf/generated_message_table_driven_lite.lo
  CXX      google/protobuf/implicit_weak_message.lo
  CXX      google/protobuf/message_lite.lo
  CXX      google/protobuf/parse_context.lo
  CXX      google/protobuf/repeated_field.lo
  CXX      google/protobuf/wire_format_lite.lo
  CXX      google/protobuf/io/coded_stream.lo
  CXX      google/protobuf/io/strtod.lo
  CXX      google/protobuf/io/zero_copy_stream.lo
  CXX      google/protobuf/io/zero_copy_stream_impl.lo
  CXX      google/protobuf/io/zero_copy_stream_impl_lite.lo
  CXXLD    libprotobuf-lite.la
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/lib'
 /bin/sh ../libtool   --mode=install /usr/bin/install -c   libprotobuf-lite.la '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/lib'
libtool: install: /usr/bin/install -c .libs/libprotobuf-lite.21.dylib /Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf-lite.21.dylib
libtool: install: (cd /Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/lib && { ln -s -f libprotobuf-lite.21.dylib libprotobuf-lite.dylib || { rm -f libprotobuf-lite.dylib && ln -s libprotobuf-lite.21.dylib libprotobuf-lite.dylib; }; })
libtool: install: /usr/bin/install -c .libs/libprotobuf-lite.lai /Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf-lite.la
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf'
 /usr/bin/install -c -m 644  google/protobuf/descriptor.proto google/protobuf/any.proto google/protobuf/api.proto google/protobuf/duration.proto google/protobuf/empty.proto google/protobuf/field_mask.proto google/protobuf/source_context.proto google/protobuf/struct.proto google/protobuf/timestamp.proto google/protobuf/type.proto google/protobuf/wrappers.proto '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler'
 /usr/bin/install -c -m 644  google/protobuf/compiler/plugin.proto '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf'
 /usr/bin/install -c -m 644  google/protobuf/any.pb.h google/protobuf/api.pb.h google/protobuf/any.h google/protobuf/arena.h google/protobuf/arena_impl.h google/protobuf/arenastring.h google/protobuf/descriptor_database.h google/protobuf/descriptor.h google/protobuf/descriptor.pb.h google/protobuf/duration.pb.h google/protobuf/dynamic_message.h google/protobuf/empty.pb.h google/protobuf/extension_set.h google/protobuf/extension_set_inl.h google/protobuf/field_mask.pb.h google/protobuf/generated_enum_reflection.h google/protobuf/generated_enum_util.h google/protobuf/generated_message_reflection.h google/protobuf/generated_message_table_driven.h google/protobuf/generated_message_util.h google/protobuf/has_bits.h google/protobuf/implicit_weak_message.h google/protobuf/inlined_string_field.h google/protobuf/map_entry.h google/protobuf/map_entry_lite.h google/protobuf/map_field.h google/protobuf/map_field_inl.h google/protobuf/map_field_lite.h google/protobuf/map.h google/protobuf/map_type_handler.h google/protobuf/message.h google/protobuf/message_lite.h google/protobuf/metadata.h google/protobuf/metadata_lite.h google/protobuf/parse_context.h google/protobuf/port.h google/protobuf/port_def.inc google/protobuf/port_undef.inc google/protobuf/reflection.h google/protobuf/reflection_ops.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/python'
 /usr/bin/install -c -m 644  google/protobuf/compiler/python/python_generator.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/python'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/php'
 /usr/bin/install -c -m 644  google/protobuf/compiler/php/php_generator.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/php'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/cpp'
 /usr/bin/install -c -m 644  google/protobuf/compiler/cpp/cpp_generator.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/cpp'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/objectivec'
 /usr/bin/install -c -m 644  google/protobuf/compiler/objectivec/objectivec_generator.h google/protobuf/compiler/objectivec/objectivec_helpers.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/objectivec'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/stubs'
 /usr/bin/install -c -m 644  google/protobuf/stubs/callback.h google/protobuf/stubs/bytestream.h google/protobuf/stubs/casts.h google/protobuf/stubs/common.h google/protobuf/stubs/fastmem.h google/protobuf/stubs/hash.h google/protobuf/stubs/logging.h google/protobuf/stubs/macros.h google/protobuf/stubs/map_util.h google/protobuf/stubs/mutex.h google/protobuf/stubs/once.h google/protobuf/stubs/platform_macros.h google/protobuf/stubs/port.h google/protobuf/stubs/status.h google/protobuf/stubs/stl_util.h google/protobuf/stubs/stringpiece.h google/protobuf/stubs/strutil.h google/protobuf/stubs/template_util.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/stubs'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/io'
 /usr/bin/install -c -m 644  google/protobuf/io/io_win32.h google/protobuf/io/coded_stream.h google/protobuf/io/gzip_stream.h google/protobuf/io/printer.h google/protobuf/io/strtod.h google/protobuf/io/tokenizer.h google/protobuf/io/zero_copy_stream.h google/protobuf/io/zero_copy_stream_impl.h google/protobuf/io/zero_copy_stream_impl_lite.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/io'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf'
 /usr/bin/install -c -m 644  google/protobuf/repeated_field.h google/protobuf/service.h google/protobuf/source_context.pb.h google/protobuf/struct.pb.h google/protobuf/text_format.h google/protobuf/timestamp.pb.h google/protobuf/type.pb.h google/protobuf/unknown_field_set.h google/protobuf/wire_format.h google/protobuf/wire_format_lite.h google/protobuf/wrappers.pb.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/java'
 /usr/bin/install -c -m 644  google/protobuf/compiler/java/java_generator.h google/protobuf/compiler/java/java_names.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/java'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler'
 /usr/bin/install -c -m 644  google/protobuf/compiler/code_generator.h google/protobuf/compiler/command_line_interface.h google/protobuf/compiler/importer.h google/protobuf/compiler/parser.h google/protobuf/compiler/plugin.h google/protobuf/compiler/plugin.pb.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/util'
 /usr/bin/install -c -m 644  google/protobuf/util/type_resolver.h google/protobuf/util/delimited_message_util.h google/protobuf/util/field_comparator.h google/protobuf/util/field_mask_util.h google/protobuf/util/json_util.h google/protobuf/util/time_util.h google/protobuf/util/type_resolver_util.h google/protobuf/util/message_differencer.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/util'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/ruby'
 /usr/bin/install -c -m 644  google/protobuf/compiler/ruby/ruby_generator.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/ruby'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/csharp'
 /usr/bin/install -c -m 644  google/protobuf/compiler/csharp/csharp_generator.h google/protobuf/compiler/csharp/csharp_names.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/csharp'
 .././install-sh -c -d '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/js'
 /usr/bin/install -c -m 644  google/protobuf/compiler/js/js_generator.h google/protobuf/compiler/js/well_known_types_embed.h '/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/compiler/js'
configure: creating ./config.status
config.status: creating src/Makevars
** libs
mkdir -p "/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/include"
cp -r /Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/google /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/include
mkdir -p "/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/"
cp /Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf* /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I/Users/biocbuild/bbs-3.11-bioc/meat/RProtoBufLib/src/pb_build/include/  -I/usr/local/include   -fPIC  -Wall -g -O2  -c dummy.cpp -o dummy.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RProtoBufLib.so dummy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-RProtoBufLib/00new/RProtoBufLib/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RProtoBufLib)