Vinh Tran
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/PhyloProfile |
| Branch: RELEASE_3_11 |
| Last Commit: 9e60604 |
| Last Changed Date: 2020-07-21 11:25:05 -0400 (Tue, 21 Jul 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:24 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE PhyloProfile PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1308/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PhyloProfile 1.2.8 Vinh Tran
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: PhyloProfile |
| Version: 1.2.8 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PhyloProfile_1.2.8.tar.gz && rm -rf PhyloProfile.buildbin-libdir && mkdir PhyloProfile.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PhyloProfile.buildbin-libdir PhyloProfile_1.2.8.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PhyloProfile_1.2.8.zip && rm PhyloProfile_1.2.8.tar.gz PhyloProfile_1.2.8.zip |
| StartedAt: 2020-10-16 18:55:31 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:56:52 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 80.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PhyloProfile_1.2.8.tar.gz && rm -rf PhyloProfile.buildbin-libdir && mkdir PhyloProfile.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PhyloProfile.buildbin-libdir PhyloProfile_1.2.8.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PhyloProfile_1.2.8.zip && rm PhyloProfile_1.2.8.tar.gz PhyloProfile_1.2.8.zip
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install for i386
* installing *source* package 'PhyloProfile' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PhyloProfile'
finding HTML links ... done
calcPresSpec html
checkInputValidity html
checkNewick html
checkOmaID html
clusterDataDend html
compareMedianTaxonGroups html
compareTaxonGroups html
createArchiPlot html
createGeneAgePlot html
createLongMatrix html
createPercentageDistributionData html
createProfileFromOma html
createRootedTree html
createVarDistPlot html
createVariableDistributionData html
createVariableDistributionDataSubset html
dataCustomizedPlot html
dataFeatureTaxGroup html
dataMainPlot html
dataVarDistTaxGroup html
distributionTest html
estimateGeneAge html
fastaParser html
featureDistTaxPlot html
filterProfileData html
finalProcessedProfile html
fromInputToProfile html
fullProcessedProfile html
geneAgePlotDf html
generateSinglePlot html
getAllDomainsOma html
getAllFastaOma html
getCommonAncestor html
getCoreGene html
getDataClustering html
getDataForOneOma html
getDendrogram html
getDistanceMatrix html
getDomainFolder html
getFastaFromFasInput html
getFastaFromFile html
getFastaFromFolder html
getIDsRank html
getInputTaxaID html
getInputTaxaName html
getNameList html
getOmaDataForOneOrtholog html
getOmaDomainFromURL html
getOmaMembers html
getQualColForVector html
getSelectedFastaOma html
getSelectedTaxonNames html
getTaxonomyInfo html
getTaxonomyMatrix html
getTaxonomyRanks html
gridArrangeSharedLegend html
heatmapPlotting html
highlightProfilePlot html
idList html
mainLongRaw html
mainTaxonomyRank html
pairDomainPlotting html
parseDomainInput html
parseInfoProfile html
ppTaxonomyMatrix html
ppTree html
processNcbiTaxonomy html
profileWithTaxonomy html
qualitativeColours html
rankIndexing html
rankList html
reduceProfile html
runPhyloProfile html
singleDomainPlotting html
sortDomains html
sortInputTaxa html
sortTaxaFromTree html
taxa2dist html
taxonNamesReduced html
taxonomyMatrix html
taxonomyTableCreator html
varDistTaxPlot html
wideToLong html
xmlParser html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PhyloProfile' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PhyloProfile' as PhyloProfile_1.2.8.zip
* DONE (PhyloProfile)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'PhyloProfile' successfully unpacked and MD5 sums checked