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BUILD report for PSICQUIC on machv2

This page was generated on 2020-10-17 11:59:17 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE PSICQUIC PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1374/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PSICQUIC 1.26.1
Paul Shannon
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/PSICQUIC
Branch: RELEASE_3_11
Last Commit: f5fb002
Last Changed Date: 2020-05-26 13:36:09 -0400 (Tue, 26 May 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: PSICQUIC
Version: 1.26.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data PSICQUIC
StartedAt: 2020-10-16 20:37:42 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 20:41:49 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 246.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data PSICQUIC
###
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* checking for file ‘PSICQUIC/DESCRIPTION’ ... OK
* preparing ‘PSICQUIC’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘PSICQUIC.Rnw’ using Sweave
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:base’:

    expand.grid

Loading required package: biomaRt
Loading required package: httr
Loading required package: plyr

Attaching package: ‘plyr’

The following object is masked from ‘package:IRanges’:

    desc

The following object is masked from ‘package:S4Vectors’:

    rename

Warning: replacing previous import ‘IRanges::desc’ by ‘plyr::desc’ when loading ‘PSICQUIC’
checking for biomart access...
   does 'http://www.ensembl.org' respond?

Error: processing vignette 'PSICQUIC.Rnw' failed with diagnostics:
 chunk 8 (label = addGeneNames) 
Error in IDMapper("9606") : url.exists(url) is not TRUE

--- failed re-building ‘PSICQUIC.Rnw’

SUMMARY: processing the following file failed:
  ‘PSICQUIC.Rnw’

Error: Vignette re-building failed.
Execution halted