Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:23 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE PING PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1315/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
PING 2.32.0 Renan Sauteraud
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: PING |
Version: 2.32.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL PING |
StartedAt: 2020-10-16 17:29:02 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 17:30:04 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 62.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL PING ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘PING’ ... ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GSL... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c init.c -o init.o gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c ping.c -o ping.o ping.c: In function ‘fitModelAllk’: ping.c:145:40: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] if( REAL(VECTOR_ELT(paraPrior, 5))[0]>0 & REAL(VECTOR_ELT(paraEM, 0))[0]==0) // automatically decide minK and maxKK for histone data, when minK=0 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ping.c: In function ‘ECM2’: ping.c:1536:9: warning: variable ‘chiSum’ set but not used [-Wunused-but-set-variable] double chiSum = 0, etaF, etaR, dd, cc; ^~~~~~ ping.c: In function ‘mergePeak’: ping.c:3280:20: warning: variable ‘tstatMax’ set but not used [-Wunused-but-set-variable] double tstat=0.0,tstatMax=0.0; ^~~~~~~~ ping.c: In function ‘fitModelK’: ping.c:477:18: warning: ‘firstFit’ may be used uninitialized in this function [-Wmaybe-uninitialized] SEXP ans, temp, firstFit; ^~~~~~~~ gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o PING.so init.o ping.o -lgsl -lgslcblas -lm -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-PING/00new/PING/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PING)