Kevin Blighe
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/PCAtools |
| Branch: RELEASE_3_11 |
| Last Commit: bb334c0 |
| Last Changed Date: 2020-04-27 15:22:29 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:22 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE PCAtools PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1284/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PCAtools 2.0.0 Kevin Blighe
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: PCAtools |
| Version: 2.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PCAtools_2.0.0.tar.gz && rm -rf PCAtools.buildbin-libdir && mkdir PCAtools.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCAtools.buildbin-libdir PCAtools_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PCAtools_2.0.0.zip && rm PCAtools_2.0.0.tar.gz PCAtools_2.0.0.zip |
| StartedAt: 2020-10-16 18:32:10 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:33:26 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 76.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PCAtools_2.0.0.tar.gz && rm -rf PCAtools.buildbin-libdir && mkdir PCAtools.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCAtools.buildbin-libdir PCAtools_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PCAtools_2.0.0.zip && rm PCAtools_2.0.0.tar.gz PCAtools_2.0.0.zip
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install for i386
* installing *source* package 'PCAtools' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/dqrng/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/dqrng/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c shuffle_matrix.cpp -o shuffle_matrix.o
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/apply.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/find_if.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/find.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/contains.hpp:20,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/math/policies/policy.hpp:10,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/math/special_functions/fpclassify.hpp:19,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/random/hyperexponential_distribution.hpp:22,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/random.hpp:69,
from shuffle_matrix.cpp:4:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
failed ************ (Pred::************
^
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
failed ************ (boost::mpl::not_<Pred>::************
^
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o PCAtools.dll tmp.def RcppExports.o shuffle_matrix.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/PCAtools.buildbin-libdir/00LOCK-PCAtools/00new/PCAtools/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PCAtools'
finding HTML links ... done
PCAtools-package html
biplot html
finding level-2 HTML links ... done
eigencorplot html
findElbowPoint html
getComponents html
getLoadings html
getVars html
pairsplot html
parallelPCA html
pca html
plotloadings html
screeplot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PCAtools' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/dqrng/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/dqrng/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c shuffle_matrix.cpp -o shuffle_matrix.o
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/apply.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/find_if.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/find.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/contains.hpp:20,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/math/policies/policy.hpp:10,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/math/special_functions/fpclassify.hpp:19,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/random/hyperexponential_distribution.hpp:22,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/random.hpp:69,
from shuffle_matrix.cpp:4:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
failed ************ (Pred::************
^
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
failed ************ (boost::mpl::not_<Pred>::************
^
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o PCAtools.dll tmp.def RcppExports.o shuffle_matrix.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/PCAtools.buildbin-libdir/PCAtools/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PCAtools' as PCAtools_2.0.0.zip
* DONE (PCAtools)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'PCAtools' successfully unpacked and MD5 sums checked