Thrash Adam
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/PAST |
| Branch: RELEASE_3_11 |
| Last Commit: 421656e |
| Last Changed Date: 2020-07-28 11:23:39 -0400 (Tue, 28 Jul 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:21 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE PAST PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1268/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PAST 1.4.3 Thrash Adam
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: PAST |
| Version: 1.4.3 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PAST_1.4.3.tar.gz && rm -rf PAST.buildbin-libdir && mkdir PAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PAST.buildbin-libdir PAST_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PAST_1.4.3.zip && rm PAST_1.4.3.tar.gz PAST_1.4.3.zip |
| StartedAt: 2020-10-16 18:43:59 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:44:53 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 54.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PAST_1.4.3.tar.gz && rm -rf PAST.buildbin-libdir && mkdir PAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PAST.buildbin-libdir PAST_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PAST_1.4.3.zip && rm PAST_1.4.3.tar.gz PAST_1.4.3.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 944k 100 944k 0 0 12.3M 0 --:--:-- --:--:-- --:--:-- 13.5M
install for i386
* installing *source* package 'PAST' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
** help
*** installing help indices
converting help for package 'PAST'
finding HTML links ... done
assign_SNPs_to_genes html
assign_chunk html
determine_linkage html
find_pathway_significance html
find_representative_SNP html
find_representative_SNP_gene_pairing html
load_GWAS_data html
load_LD html
plot_pathways html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PAST' ...
** testing if installed package can be loaded
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
* MD5 sums
packaged installation of 'PAST' as PAST_1.4.3.zip
* DONE (PAST)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'PAST' successfully unpacked and MD5 sums checked