Luca De Sano
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/OncoScore |
| Branch: RELEASE_3_11 |
| Last Commit: 40d7b3d |
| Last Changed Date: 2020-04-27 14:55:54 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:19 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE OncoScore PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1231/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| OncoScore 1.16.0 Luca De Sano
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: OncoScore |
| Version: 1.16.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/OncoScore_1.16.0.tar.gz && rm -rf OncoScore.buildbin-libdir && mkdir OncoScore.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OncoScore.buildbin-libdir OncoScore_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL OncoScore_1.16.0.zip && rm OncoScore_1.16.0.tar.gz OncoScore_1.16.0.zip |
| StartedAt: 2020-10-16 17:43:02 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:43:51 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 48.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/OncoScore_1.16.0.tar.gz && rm -rf OncoScore.buildbin-libdir && mkdir OncoScore.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OncoScore.buildbin-libdir OncoScore_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL OncoScore_1.16.0.zip && rm OncoScore_1.16.0.tar.gz OncoScore_1.16.0.zip
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install for i386
* installing *source* package 'OncoScore' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'OncoScore'
finding HTML links ... done
combine.query.results html
combine.single.matrix html
compute.frequencies.scores html
compute.oncoscore html
compute.oncoscore.from.region html
compute.oncoscore.timeseries html
estimate.oncogenes html
genes html
get.genes.from.biomart html
get.list.from.xml html
get.pubmed.driver.analysis html
perform.query html
perform.query.from.region html
perform.query.timeseries html
plot.oncoscore html
plot.oncoscore.timeseries html
query html
query.timepoints html
timepoints html
try.scan html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'OncoScore' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OncoScore' as OncoScore_1.16.0.zip
* DONE (OncoScore)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'OncoScore' successfully unpacked and MD5 sums checked