Alberto Valdeolivas Urbelz
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/OmnipathR |
| Branch: RELEASE_3_11 |
| Last Commit: 5b5bf15 |
| Last Changed Date: 2020-06-08 16:24:54 -0400 (Mon, 08 Jun 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:18 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE OmnipathR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1228/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| OmnipathR 1.2.1 Alberto Valdeolivas Urbelz
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: OmnipathR |
| Version: 1.2.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/OmnipathR_1.2.1.tar.gz && rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmnipathR.buildbin-libdir OmnipathR_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL OmnipathR_1.2.1.zip && rm OmnipathR_1.2.1.tar.gz OmnipathR_1.2.1.zip |
| StartedAt: 2020-10-16 17:31:32 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:32:22 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 50.2 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/OmnipathR_1.2.1.tar.gz && rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmnipathR.buildbin-libdir OmnipathR_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL OmnipathR_1.2.1.zip && rm OmnipathR_1.2.1.tar.gz OmnipathR_1.2.1.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 122k 100 122k 0 0 3593k 0 --:--:-- --:--:-- --:--:-- 4238k
install for i386
* installing *source* package 'OmnipathR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'OmnipathR'
finding HTML links ... done
OmnipathR html
get_annotation_databases html
get_complex_genes html
get_complexes_databases html
get_interaction_databases html
get_intercell_categories html
get_intercell_classes html
get_ptms_databases html
get_signed_ptms html
import_AllInteractions html
import_KinaseExtra_Interactions html
import_LigrecExtra_Interactions html
import_Omnipath_Interactions html
import_Omnipath_PTMS html
import_Omnipath_annotations html
import_Omnipath_complexes html
import_Omnipath_intercell html
import_PathwayExtra_Interactions html
import_TFregulons_Interactions html
import_miRNAtarget_Interactions html
interaction_graph html
printPath_es html
printPath_vs html
print_interactions html
ptms_graph html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'OmnipathR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OmnipathR' as OmnipathR_1.2.1.zip
* DONE (OmnipathR)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'OmnipathR' successfully unpacked and MD5 sums checked