Jakob Willforss
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/NormalyzerDE |
| Branch: RELEASE_3_11 |
| Last Commit: c882059 |
| Last Changed Date: 2020-04-27 15:19:16 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:17 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE NormalyzerDE PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1201/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| NormalyzerDE 1.6.0 Jakob Willforss
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: NormalyzerDE |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/NormalyzerDE_1.6.0.tar.gz && rm -rf NormalyzerDE.buildbin-libdir && mkdir NormalyzerDE.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NormalyzerDE.buildbin-libdir NormalyzerDE_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL NormalyzerDE_1.6.0.zip && rm NormalyzerDE_1.6.0.tar.gz NormalyzerDE_1.6.0.zip |
| StartedAt: 2020-10-16 18:06:24 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:08:07 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 102.6 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/NormalyzerDE_1.6.0.tar.gz && rm -rf NormalyzerDE.buildbin-libdir && mkdir NormalyzerDE.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NormalyzerDE.buildbin-libdir NormalyzerDE_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL NormalyzerDE_1.6.0.zip && rm NormalyzerDE_1.6.0.tar.gz NormalyzerDE_1.6.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 923k 100 923k 0 0 12.7M 0 --:--:-- --:--:-- --:--:-- 14.0M
install for i386
* installing *source* package 'NormalyzerDE' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'NormalyzerDE'
finding HTML links ... done
NormalyzerDataset html
NormalyzerEvaluationResults html
NormalyzerResults html
NormalyzerStatistics html
analyzeNormalizations html
calculateANOVAPValues html
calculateAvgMadMem html
calculateAvgReplicateVariation html
calculateContrasts html
calculateCorrSum html
calculateFeatureCV html
calculatePercentageAvgDiffInMat html
calculateReplicateCV html
calculateSummarizedCorrelationVector html
createDirectory html
detectSingleReplicate html
detectSingletonSample html
elapsedSecondsBetweenSystimes html
example_data html
example_data_only_values html
example_design html
example_stat_data html
example_stat_summarized_experiment html
example_summarized_experiment html
example_wide_data html
example_wide_design html
filterLowRep html
findLowlyVariableFeaturesCVs html
generateAnnotatedMatrix html
generatePlots html
generateStatsReport html
getCombinedMatrix html
getIndexList html
getLowCountSampleFiltered html
getRTNormalizedMatrix html
getReplicateSortedData html
getRowNAFilterContrast html
getSmoothedRTNormalizedMatrix html
getVerifiedNormalyzerObject html
getWidenedRTRange html
globalIntensityNormalization html
loadData html
loadDesign html
loadRawDataFromFile html
meanNormalization html
medianNormalization html
normMethods html
normalyzer html
normalyzerDE html
performCyclicLoessNormalization html
performGlobalRLRNormalization html
performNoNormalization html
performNormalizations html
performQuantileNormalization html
performSMADNormalization html
performVSNNormalization html
plotBoxPlot html
plotCVvsIntensity html
plotComparisonVenns html
plotContrastPCA html
plotContrastPHists html
plotCorrelation html
plotDendrograms html
plotDensity html
plotFrontPage html
plotMA html
plotMDS html
plotMeanSD html
plotPHist html
plotQQ html
plotRLE html
plotReplicateVarAndStableVariables html
plotReplicateVariance html
plotSampleOutlierSummary html
plotScatter html
plotSigScatter html
preprocessData html
printMeta html
printPlots html
reduceTechnicalReplicates html
setupJobDir html
setupPlotting html
setupRawContrastObject html
setupRawDataObject html
setupTestData html
validateSampleReplication html
verifyContrasts html
verifyDesignMatrix html
verifyMultipleSamplesPresent html
verifySummarizedExperiment html
verifyValidNumbers html
writeNormalizedDatasets html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'NormalyzerDE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NormalyzerDE' as NormalyzerDE_1.6.0.zip
* DONE (NormalyzerDE)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'NormalyzerDE' successfully unpacked and MD5 sums checked