Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:17 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE NoRCE PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1199/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
NoRCE 1.0.0 Gulden Olgun
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: NoRCE |
Version: 1.0.0 |
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:NoRCE.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings NoRCE_1.0.0.tar.gz |
StartedAt: 2020-10-17 06:30:00 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 06:43:02 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 782.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: NoRCE.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:NoRCE.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings NoRCE_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/NoRCE.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'NoRCE/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'NoRCE' version '1.0.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'NoRCE' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed predictmiTargets 22.67 0.16 23.39 genePathwayEnricher 14.73 0.12 17.12 KeggEnrichment 11.27 0.60 29.43 assembly 8.72 0.70 25.94 geneGOEnricher 8.15 0.25 8.82 calculateCorr 8.28 0.01 8.29 mirnaGOEnricher 6.95 0.19 14.89 writeEnrichment 6.34 0.22 7.03 reactomeEnrichment 4.55 0.04 5.39 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed predictmiTargets 16.10 0.23 16.46 genePathwayEnricher 12.13 0.07 13.67 KeggEnrichment 10.84 0.25 26.69 calculateCorr 8.47 0.00 9.06 assembly 7.25 0.26 23.95 writeEnrichment 7.07 0.20 7.26 geneGOEnricher 6.72 0.34 7.06 mirnaRegionGOEnricher 5.25 0.23 5.49 mirnaGOEnricher 5.10 0.07 5.17 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
NoRCE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/NoRCE_1.0.0.tar.gz && rm -rf NoRCE.buildbin-libdir && mkdir NoRCE.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NoRCE.buildbin-libdir NoRCE_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL NoRCE_1.0.0.zip && rm NoRCE_1.0.0.tar.gz NoRCE_1.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1646k 100 1646k 0 0 20.4M 0 --:--:-- --:--:-- --:--:-- 22.3M install for i386 * installing *source* package 'NoRCE' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'NoRCE' finding HTML links ... done KeggEnrichment html NoRCE-class html WikiEnrichment html annGO html assembly html brain_disorder_ncRNA html brain_mirna html breastmRNA html calculateCorr html convertGMT html convertGeneID html corrbased html corrbasedMrna html createNetwork html drawDotPlot html extractBiotype html filterBiotype html geneGOEnricher html genePathwayEnricher html geneRegionGOEnricher html geneRegionPathwayEnricher html getGoDag html getKeggDiagram html getNearToExon html getNearToIntron html getReactomeDiagram html getTADOverlap html getUCSC html getmiRNACount html goEnrichment html listTAD html mirna html mirnaGOEnricher html mirnaPathwayEnricher html mirnaRegionGOEnricher html mirnaRegionPathwayEnricher html mrna html ncRegion html packageCheck html pathwayEnrichment html predictmiTargets html reactomeEnrichment html setParameters html tad_dmel html tad_hg19 html tad_hg38 html tad_mm10 html topEnrichment html writeEnrichment html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'NoRCE' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'NoRCE' as NoRCE_1.0.0.zip * DONE (NoRCE) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'NoRCE' successfully unpacked and MD5 sums checked
NoRCE.Rcheck/tests_i386/testthat.Rout R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(NoRCE) > > test_check("NoRCE") == testthat results =========================================================== [ OK: 1 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 11.09 1.28 15.81 |
NoRCE.Rcheck/tests_x64/testthat.Rout R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(NoRCE) > > test_check("NoRCE") == testthat results =========================================================== [ OK: 1 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 13.15 0.64 17.04 |
NoRCE.Rcheck/examples_i386/NoRCE-Ex.timings
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NoRCE.Rcheck/examples_x64/NoRCE-Ex.timings
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