NOISeq 2.31.1
Sonia Tarazona
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/NOISeq |
| Branch: master |
| Last Commit: ad30e0a |
| Last Changed Date: 2019-12-18 07:00:58 -0500 (Wed, 18 Dec 2019) |
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | ERROR | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data NOISeq
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* checking for file ‘NOISeq/DESCRIPTION’ ... OK
* preparing ‘NOISeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘NOISeq.Rnw’ using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply,
parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame,
basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep,
grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To cite
Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: splines
Loading required package: Matrix
Error: processing vignette 'NOISeq.Rnw' failed with diagnostics:
chunk 25 (label = QCreportExample)
Error in saturation.plot(QCinfo$data$saturation, samples = samples2[mifactor == :
object 'mifactor' not found
--- failed re-building ‘NOISeq.Rnw’
SUMMARY: processing the following file failed:
‘NOISeq.Rnw’
Error: Vignette re-building failed.
Execution halted