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CHECK report for MsCoreUtils on machv2

This page was generated on 2020-10-17 11:59:00 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE MsCoreUtils PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1135/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MsCoreUtils 1.0.0
RforMassSpectrometry Package Maintainer
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/MsCoreUtils
Branch: RELEASE_3_11
Last Commit: d447cd6
Last Changed Date: 2020-04-27 15:35:44 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: MsCoreUtils
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:MsCoreUtils.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings MsCoreUtils_1.0.0.tar.gz
StartedAt: 2020-10-17 03:16:46 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 03:18:31 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 105.0 seconds
RetCode: 0
Status:  OK 
CheckDir: MsCoreUtils.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:MsCoreUtils.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings MsCoreUtils_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/MsCoreUtils.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MsCoreUtils/DESCRIPTION’ ... OK
* this is package ‘MsCoreUtils’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MsCoreUtils’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.11-bioc/meat/MsCoreUtils.Rcheck/00check.log’
for details.

Installation output

MsCoreUtils.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL MsCoreUtils
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘MsCoreUtils’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c impNeighbourAvg.c -o impNeighbourAvg.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c localMaxima.c -o localMaxima.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MsCoreUtils.so impNeighbourAvg.o init.o localMaxima.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-MsCoreUtils/00new/MsCoreUtils/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MsCoreUtils)

Tests output

MsCoreUtils.Rcheck/tests/testthat.Rout


R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> ## data(se_na2, package = "Features")
> ## dput(assay(se_na2))
> x <- structure(c(0.32325, 0.332, 0.39725, 0.336733, 0.3288, NA, 0.3475, 
+                  0.368452, 0.349182, 0.275, 0.2435, 0.268625, 0.262267, 0.3063, 
+                  0.2454, 0.271923, 0.2796, 0.304043, 0.2481, NA, NA, 0.268826, 
+                  0.3135, 0.281385, 0.2542, 0.2555, 0.269333, 0.272, 0.285667, 
+                  0.259333, 0.2565, 0.26, 0.28325, 0.3015, 0.254, 0.268789, 0.242714, 
+                  0.243, 0.2855, 0.284091, 0.262182, 0.25075, 0.292, 0.323125, 
+                  0.229333, 0.289648, 0.22925, 0.264793, 0.27875, 0.242, 0.2862, 
+                  0.321, 0.2892, 0.351333, 0.2754, 0.24, 0.237417, 0.267, 0.270167, 
+                  0.296, 0.283667, 0.257, 0.266286, 0.280935, 0.254667, 0.217, 
+                  0.303917, 0.252, 0.2315, 0.2614, 0.275071, 0.230273, 0.28, 0.2685, 
+                  0.2565, 0.183, 0.264739, 0.291143, 0.253, 0.251444, 0.234429, 
+                  0.270571, 0.284125, 0.338, 0.17, 0.266667, 0.315, 0.254667, 0.257, 
+                  0.30135, 0.256333, 0.2125, 0.256333, 0.245167, 0.256333, 0.308333, 
+                  0.2768, 0.238773, 0.2638, 0.24375, 0.3195, 0.231, 0.280333, 0.303, 
+                  0.3185, 0.267, 0.2786, 0.272211, 0.297, 0.226, 0.2445, 0.2506, 
+                  0.223, 0.2935, 0.2368, 0.263667, 0.246708, 0.248, NA, 0.271667, 
+                  0.2738, 0.27575, 0.2675, 0.186, 0.305833, 0.250333, 0.2576, 0.271, 
+                  0.2806, 0.21725, 0.302353, 0.257889, 0.346, 0.262231, 0.2438, 
+                  0.32375, 0.2475, 0.257, 0.24, 0.2925, 0.26405, 0.2714, NA, 0.3125, 
+                  0.279, 0.2465, 0.3165, NA, 0.364222, 0.335, 0.342667, 0.373857, 
+                  0.352414, 0.279, 0.328, 0.383, 0.2815, 0.266333, 0.244222, 0.282, 
+                  0.272286, 0.31725, 0.25475, 0.0388, 0.125, 0.069, 0.083, 0.168, 
+                  0.113, 0.150333, 0.0753333, 0.0784, 0.1295, 0.064, 0.071, 0.107667, 
+                  0.152667, 0.185, 0.119167, 0.0836667, 0.106077, 0.178, 0.11425, 
+                  0.100667, 0.149, 0.106, 0.097, 0.1, 0.079, 0.079, 0.111143, 0.101667, 
+                  0.09, 0.096, 0.03, 0.095, 0.0805, 0.0923333, 0.07, 0.119, 0.1038, 
+                  0.108444, 0.08, 0.066, 0.0922, 0.119667, 0.119, 0.10025, 0.0986667, 
+                  0.06075, 0.0745, 0.0882857, 0.1128, 0.084, 0.100929, 0.0695, 
+                  0.0972, 0.12075, 0.153, 0.086, 0.0961667, 0.0825, 0.0915, 0.0978333, 
+                  0.129, 0.0870833, 0.0806667, 0.054, 0.07975, 0.085, 0.0703333, 
+                  0.1185, 0.163, 0.1134, 0.09875, 0.1775, 0.1455, 0.115667, 0.133, 
+                  NA, 0.0458333, 0.0881429, 0.116333, 0.0903333, 0.0966667, 0.0494, 
+                  0.0671429, 0.07075, 0.0935455, 0.0942979, 0.047, 0.108864, 0.0794, 
+                  0.102304, 0.0574286, 0.1099, NA, 0.0935, 0.0931163, 0.104513, 
+                  0.081375, 0.072, 0.0756667, 0.09, 0.0463333, 0.1025, 0.0875, 
+                  0.073, 0.0813333, 0.09925, 0.099, 0.09764, 0.0481818, 0.0918333, 
+                  NA, 0.121333, 0.0716471, 0.0528333, 0.0615, 0.079, 0.119333, 
+                  0.12425, 0.056, 0.0435, 0.0556667, 0.109, 0.0531429, 0.065, 0.0804444, 
+                  0.076, 0.0703333, 0.043, 0.078, 0.0839167, 0.0828182, 0.0945, 
+                  0.0916667, 0.06, NA, 0.122375, 0.0658889, 0.06075, 0.0675, 0.0642222, 
+                  0.07325, 0.09075, 0.0654444, 0.103, 0.047, 0.108, 0.0385, 0.0834286, 
+                  0.095, 0.0636842, 0.0768333, 0.0876667, NA, 0.0684286, 0.0905714, 
+                  0.179, 0.046, 0.079, 0.0555, NA, 0.079, 0.076, 0.086, 0.07675, 
+                  0.0325, 0.083, 0.0668, 0.0764, 0.08525, 0.1178, 0.09275, 0.0705, 
+                  0.0791111, 0.11, 0.0765, 0.1242, 0.161, 0.1059, 0.1625, 0.1, 
+                  0.134, 0.113, 0.14, 0.127, 0.130667, 0.081, 0.1314, 0.0925, 0.114667, 
+                  0.0662, 0.1285, 0.144714, 0.282, 0.2214, 0.2, 0.2375, 0.159667, 
+                  0.211923, NA, 0.2185, 0.172333, 0.1975, 0.160667, 0.167, 0.116, 
+                  0.16675, 0.187, 0.1645, 0.070625, 0.095, 0.0913333, 0.1715, 0.0945714, 
+                  0.31875, 0.2852, 0.35375, 0.3852, NA, 0.2965, 0.275167, 0.314, 
+                  0.3035, 0.2548, NA, 0.291, 0.320083, 0.3105, 0.345667, 0.2462, 
+                  0.305667, 0.2722, 0.289, 0.29475, 0.332571, 0.272, 0.273, 0.274, 
+                  0.234667, 0.240333, 0.2175, 0.324, 0.46, 0.46075, 0.471, 0.402667, 
+                  0.4135, 0.0423333, 0.059, 0.0854444, 0.0723333, 0.047125, 0.0435, 
+                  0.08825, 0.0754, 0.104, 0.193, 0.0736, 0.0498, 0.0701667, 0.0775, 
+                  0.155571, 0.1592, 0.214333, 0.165, 0.1763, 0.163667, 0.169222, 
+                  0.1565, 0.168333, 0.19, 0.173, 0.178, 0.1515, 0.1685, 0.199, 
+                  NA, 0.160167, 0.1874, 0.16225, 0.173857, 0.223, 0.166737, 0.222, 
+                  0.179533, 0.179, 0.174333, 0.1995, 0.197333, NA, 0.1892, 0.167, 
+                  NA, 0.207, 0.182, 0.18875, 0.181727, 0.17, 0.181, 0.17, 0.1795, 
+                  0.1605, 0.172, 0.167111, 0.154, 0.1645, 0.163167, 0.163, 0.169, 
+                  0.182, NA, 0.239, 0.1905, 0.232, 0.177667, 0.174417, 0.185, 0.218125, 
+                  0.159333, 0.178, NA, 0.168, 0.023, 0.1194, 0.16525, 0.1574, 0.166, 
+                  0.155667, NA, 0.1446, 0.154, 0.161, 0.0438, 0.049, 0.0695, 0.096, 
+                  0.014, 0.0495, NA, 0.341, 0.361125, 0.307167, 0.3365, 0.307, 
+                  0.24625, 0.193, 0.314, 0.3354, 0.264, 0.198, 0.2645, 0.18075, 
+                  NA, 0.191, 0.235, 0.2175, 0.0896, 0.2715, 0.061, 0.246, 0.235, 
+                  0.268, 0.233, 0.3695, 0.36125, 0.343, 0.32075, 0.366333, 0.1934, 
+                  0.206444, 0.13, 0.21375, 0.1658, 0.2605, 0.062, 0.1945, 0.175, 
+                  0.06825, NA, 0.1855, 0.2535, 0.291, 0.1355, 0.413, 0.164, 0.141667, 
+                  0.155667, 0.275, 0.13775, NA, 0.0573333, 0.156, 0.1365, 0.282, 
+                  0.3145, 0.24375, 0.252333, 0.131, 0.176636, 0.275667, 0.26925, 
+                  0.243, 0.0862, 0.112, 0.209833, 0.183, 0.4195, 0.144, 0.2485, 
+                  NA, 0.2094, 0.254, 0.247667, 0.237, 0.136875, 0.2082, NA, NA, 
+                  0.390333, 0.381, 0.081, 0.145, 0.2175, 0.292, 0.241, 0.1516, 
+                  0.386882, 0.0734, 0.304667, 0.14, NA, 0.13, 0.1478, 0.1898, 0.4055, 
+                  0.291333, 0.1782, 0.471, 0.205, 0.165, 0.148286, 0.248, 0.181, 
+                  0.257333, 0.156333, 0.238, 0.203, 0.114, 0.326, 0.2245, 0.2755, 
+                  0.2914, 0.250333, 0.144, 0.316667, 0.254, 0.259667, 0.287, 0.1818, 
+                  0.1185, 0.21, 0.269571, 0.214333, 0.244818, 0.23, 0.1882, 0.125, 
+                  0.228, 0.0766667, 0.125333, 0.076, 0.248, 0.217, 0.02, 0.236, 
+                  0.281, 0.238, 0.1225, 0.1655, 0.16, 0.0618571, NA, 0.127, 0.17, 
+                  0.195, 0.201, 0.0688333, 0.2135, 0.229, 0.187655, 0.1916, 0.196, 
+                  0.295, 0.181, 0.136, 0.1525, 0.225, 0.248, 0.167, 0.086, NA, 
+                  0.18025, 0.244, 0.259, 0.14825, 0.2445, NA, 0.56, 0.504167, 0.499, 
+                  0.588, 0.5515, 0.5015, 0.4515, 0.5595, 0.507318, 0.527625, NA, 
+                  0.591, 0.512714, 0.498, 0.4835, 0.4925, NA, 0.497, 0.4318, 0.2755, 
+                  0.279667, 0.2465, NA, NA, NA, 0.2545, 0.290032, 0.288273, 0.276, 
+                  0.3015, 0.311625, 0.302, 0.3127, 0.3168, 0.278808, 0.3089, 0.318, 
+                  0.316, 0.297667, 0.295, 0.309978, 0.316, 0.324077, 0.2974, 0.319, 
+                  0.285333, 0.3032, 0.309, 0.295, 0.303667, 0.312, 0.32575, 0.315, 
+                  0.3025, 0.318044, 0.306143, 0.242, 0.2885, 0.321333, 0.327091, 
+                  0.3575, 0.281, 0.32425, NA, 0.308815, 0.33475, 0.289276, 0.34725, 
+                  0.301, 0.328933, NA, 0.3222, 0.301333, 0.332, 0.296667, 0.310417, 
+                  0.335, 0.346833, 0.316538, 0.322, 0.241, 0.278429, 0.314742, 
+                  0.327667, 0.2935, 0.322083, 0.283, 0.2915, NA, 0.308143, 0.299614, 
+                  0.313667, 0.334, 0.28925, 0.335, 0.299978, 0.306714, NA, 0.323, 
+                  0.365571, 0.282, 0.3295, 0.344, 0.292, 0.316333, NA, 0.318667, 
+                  0.3125, 0.31275, 0.310333, 0.268, 0.316, 0.283, 0.301667, 0.307333, 
+                  0.2934, 0.311273, 0.2828, 0.2775, 0.307, 0.354, 0.314833, 0.2965, 
+                  0.283, 0.334, 0.305, 0.301526, 0.30825, 0.271, 0.3015, 0.3439, 
+                  0.304, 0.31, 0.2903, 0.298333, 0.328917, 0.314, 0.293, 0.323, 
+                  0.2878, 0.306, 0.299833, 0.326, 0.308, 0.355667, 0.3254, 0.321, 
+                  0.3024, NA, 0.312353, 0.311667, 0.306, 0.316, 0.2908, NA, 0.306909, 
+                  0.286, 0.3218, 0.30075, 0.2886, 0.3086, 0.295714, 0.305, 0.3245, 
+                  0.3245, 0.315, 0.31, 0.265222, 0.278, NA, 0.270429, 0.295776, 
+                  0.294, 0.25, 0.261, 0.29625, 0.296, 0.271611, 0.277667, 0.282857, 
+                  0.29375, 0.30025, 0.2522, 0.227, 0.2085, 0.2, 0.2165, 0.2075, 
+                  0.257167, 0.230333, 0.3088, 0.213, 0.2045, 0.1725, 0.278333, 
+                  0.218333, 0.198, 0.178333, 0.196333, 0.206231, 0.272, 0.19725, 
+                  0.234667, 0.278, 0.186, 0.179, 0.259, NA, 0.1736, 0.214, 0.209667, 
+                  0.2165, 0.1752, 0.323, 0.282895, 0.3125, 0.28, 0.187364, 0.2684, 
+                  NA, 0.281778, 0.244, 0.2655, 0.1672, 0.275, 0.209, 0.28125, 0.308667, 
+                  0.24925, 0.1905, 0.282714, 0.2064, 0.2395, 0.234071, NA, 0.1984, 
+                  0.206, 0.23, 0.15925, 0.2165, 0.30175, 0.2285, 0.286333, 0.3195, 
+                  0.24525, 0.236667, 0.149, 0.33775, 0.287167, 0.267, 0.20975, 
+                  0.284333, 0.289, NA, 0.30925, 0.28225, 0.207333, 0.338, 0.192714, 
+                  0.159833, 0.200143, 0.185667, 0.185667, 0.193, 0.1692, 0.197, 
+                  0.1805, 0.184208, 0.194298, 0.156, 0.187909, 0.188029, 0.194957, 
+                  0.176143, 0.2067, 0.168333, 0.189, 0.196233, 0.193671, 0.184917, 
+                  0.172154, 0.187667, 0.1905, 0.131333, 0.1695, 0.157, 0.158333, 
+                  0.162667, 0.1645, 0.14525, 0.15384, 0.109818, 0.155, NA, 0.179333, 
+                  0.129353, 0.1575, 0.192, 0.1945, 0.193333, 0.2185, 0.1824, 0.165, 
+                  0.173667, 0.181333, 0.173857, 0.177, 0.184056, 0.174, 0.179667, 
+                  0.157, 0.209, 0.182417, 0.197818, 0.176, 0.169333, 0.19, 0.174, 
+                  0.191125, 0.175, 0.165, 0.172125, 0.151222, 0.16775, 0.159, 0.1825, 
+                  0.199, 0.143667, 0.208, 0.16275, 0.178286, 0.2025, 0.161474, 
+                  0.178167, 0.214, NA, 0.173714, 0.166829, 0.226, 0.124, 0.131, 
+                  0.12425, NA, 0.128667, 0.1485, 0.17, 0.153, NA, 0.155143, 0.1152, 
+                  0.15, 0.163125, 0.174, 0.157125, 0.1245, 0.155111, 0.180667, 
+                  0.15, 0.1848, 0.201, 0.2149, 0.128, 0.178, 0.173667, 0.182, 0.21625, 
+                  0.2595, 0.195167, 0.244, 0.2084, 0.1765, 0.197, 0.1518, 0.16825, 
+                  0.206714, 0.308, 0.3334, 0.302, 0.2895, 0.300333, 0.291769, NA, 
+                  0.322667, 0.336333, 0.331, 0.354, 0.322, 0.345333, 0.329333, 
+                  0.359, 0.326, 0.34425, 0.293, NA, 0.332, 0.306714, 0.2965, 0.342, 
+                  0.31725, 0.2764, NA, 0.305571, 0.294833, 0.2615, 0.2635, 0.2908, 
+                  0.235222, 0.279, 0.259333, 0.245, 0.225, 0.2908, NA, 0.2412, 
+                  0.2308, 0.2225, 0.215857, 0.2315, 0.237, 0.207, 0.204667, NA, 
+                  NA, 0.254, 0.195, 0.204, 0.1875, 0.218167, 0.2145, 0.108333, 
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+                  0.46675, 0.53025, 0.4565, 0.4585, 0.481667, 0.573167, 0.548667, 
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+                  0.295375, 0.326, 0.290333, 0.281417, 0.2785, 0.262, 0.322917, 
+                  0.307125, 0.33875, 0.30675, 0.279222, 0.313786, 0.2937, 0.315412, 
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+                  0.245, 0.289333, 0.284, 0.3105, 0.259, 0.30625, 0.334947, 0.2905, 
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+                  0.3038, 0.291333, 0.312, 0.283778, 0.319818, 0.3064, 0.3125, 
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+                  0.289714, 0.23, 0.3075, 0.2615, 0.293167, 0.295333, 0.238889, 
+                  0.233, 0.28025, 0.3008, 0.188333, 0.239111, 0.342667, 0.262, 
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+                  0.343, 0.311778, 0.2372, 0.281286, 0.292214, NA, 0.291444, 0.217, 
+                  0.182333, 0.193833, 0.1595, 0.2106, 0.1835, 0.187333, 0.1975, 
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+                  0.204, 0.1676, 0.16825, 0.171933, 0.164417, 0.184143, NA, 0.171, 
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+                  0.125667, 0.055, 0.062, 0.0833333, 0.0775714, 0.169429, 0.1954, 
+                  0.19, 0.1746, 0.19975, 0.20475, 0.183333, 0.17425, 0.1728, 0.169, 
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+                  0.174667, 0.1925, 0.178667, 0.182889, 0.168333, 0.1655, 0.1668, 
+                  0.193429, 0.173875, 0.148, 0.1886, 0.180643, 0.202, 0.19625, 
+                  0.1395, 0.21, 0.210667, 0.126333, 0.172615, 0.157, 0.1865, 0.1745, 
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+                  0.1085, 0.115, 0.1005, 0.092, 0.123, 0.0935714, 0.064, 0.07275, 
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+                  0.184, 0.1796, 0.1965, 0.2028, 0.1525, 0.167714, 0.1935, 0.1355, 
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+                  0.301111, 0.3277, 0.275211, 0.2205, 0.189, 0.234, 0.2195, 0.228333, 
+                  0.212, 0.239444, 0.207333, 0.20525, 0.21, 0.190667, 0.160167, 
+                  0.18575, 0.193, 0.186111, 0.215, 0.215, 0.1454, 0.1155, 0.129, 
+                  0.125667, 0.180333, 0.1736, 0.1585, 0.214, NA, 0.1532, 0.095, 
+                  0.108, 0.12875, 0.165667, 0.108333, 0.109, 0.17, 0.176333, 0.165333, 
+                  0.089, 0.183, 0.1695, 0.143, 0.095, 0.194, 0.221625, 0.1975, 
+                  0.184, 0.2126, 0.288, 0.207571, 0.222889, 0.19175, 0.1955, 0.2262, 
+                  0.171, NA, 0.2211, 0.2005, 0.215, 0.2045, 0.2062, 0.221625, 0.227714, 
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+                  0.20825, 0.2055, 0.224, 0.234, 0.211, 0.189, 0.237, 0.217, 0.213889, 
+                  0.203, 0.238, 0.25, 0.241, 0.207357, 0.223833, 0.213556, 0.212875, 
+                  0.221111, 0.204875, 0.225571, 0.244667, 0.2146, 0.1952, 0.217, 
+                  0.22225, 0.212929, 0.222333, 0.197154, 0.228, 0.234, 0.23775, 
+                  NA, 0.1753, 0.209125, 0.2394, 0.2435, 0.2218, 0.204, 0.238, 0.222, 
+                  NA, 0.2434, 0.168875, 0.157333, NA, 0.1064, NA, 0.075, 0.315, 
+                  0.18625, 0.182667, 0.168, NA, 0.21675, 0.219333, 0.20325, 0.266, 
+                  0.236333, 0.144, 0.184, NA, 0.216667, 0.24, 0.23775, 0.218, 0.22, 
+                  0.204, 0.30025, 0.325, 0.18, 0.189, 0.1798, 0.197833, 0.1395, 
+                  0.118333, 0.137, 0.174, 0.17525, 0.210333, 0.281333, 0.21, 0.2724, 
+                  0.2426, 0.233, 0.193333, 0.2495, 0.2385, 0.2248, 0.22825, 0.253, 
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+                  0.17, 0.152, 0.253, 0.291667, 0.264667, 0.27025, 0.180333, 0.346, 
+                  0.2785, 0.274778, 0.207, 0.244333, 0.26275, 0.336667, 0.211, 
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+                  0.1695, 0.219, 0.257, NA, 0.1994, 0.217, 0.275, 0.205, 0.224, 
+                  0.31, 0.24, 0.224333, 0.206563, 0.205455, 0.249, 0.283, 0.23, 
+                  0.227, 0.184, 0.177667, 0.198, 0.17, 0.22975, 0.26975, 0.185, 
+                  0.1605, 0.221333, 0.20025, 0.293, 0.2308, NA, 0.223, 0.169, 0.291857, 
+                  0.216, 0.2315, 0.2185, 0.3815, 0.24275, 0.2285, 0.223, 0.2155, 
+                  0.246, 0.2365, 0.2065, NA, 0.2805, 0.228833, 0.324111, 0.278333, 
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+                  0.2875, 0.236167, 0.171, 0.269, NA, 0.367556, 0.3382, 0.184, 
+                  0.21375, 0.283469, NA, 0.2214, 0.224, 0.22875, 0.225, 0.231333, 
+                  0.274, 0.287667, 0.302, 0.217, 0.1265, 0.2975, 0.248333, 0.232, 
+                  0.198, 0.228, 0.26, NA, 0.128, 0.15725, 0.1605, 0.142667, 0.154, 
+                  0.157556, 0.150667, 0.1425, 0.146, 0.14365, 0.158, 0.1395, 0.136333, 
+                  0.126, 0.130667, 0.154167, 0.1422, 0.1392, 0.161, 0.153, 0.1725, 
+                  0.147333, 0.158667, 0.176625, 0.114, 0.150095, 0.151, 0.2385, 
+                  0.239, 0.207083, 0.21175, 0.223, 0.24075, 0.255889, 0.240357, 
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+                  0.2216, 0.241333, 0.2285, 0.215, 0.235, 0.226667, 0.193, 0.212, 
+                  0.20425, 0.2165, 0.222889, 0.211333, 0.198714, 0.2094, 0.237375, 
+                  0.250333, 0.191286, 0.236167, 0.208667, 0.222333, 0.210944, 0.2465, 
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+                  0.2295, 0.234167, 0.226889, 0.201667, 0.2348, 0.215286, 0.2455, 
+                  0.169, 0.245, 0.215545, 0.220167, 0.245, 0.214333, 0.236667, 
+                  NA, 0.236, 0.2035, 0.222316, 0.21925, 0.21, 0.245818, 0.23225, 
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+                  0.2106, 0.241667, 0.194, 0.204, 0.26075, NA, 0.249, 0.204333, 
+                  0.267, 0.216167, 0.236, 0.214143, 0.215333, 0.285, 0.2466, 0.226667, 
+                  0.205, 0.220667, 0.236, 0.211667, 0.24, 0.219167, 0.2404, 0.243, 
+                  0.219, 0.215, 0.253, 0.229143, 0.249167, 0.2112, NA, 0.209111, 
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+                  0.20175, 0.217125, 0.215875, 0.165, 0.209, 0.202, 0.1995, 0.207, 
+                  NA, 0.1495, 0.1578, 0.177947, 0.199, 0.204893, 0.251, 0.192, 
+                  0.224714, 0.294667, 0.2275, 0.2381, 0.2275, 0.228, 0.239, 0.266, 
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+                  0.412143, 0.4155, 0.4165, 0.313, 0.408, 0.404, 0.43, 0.378667, 
+                  0.407556, 0.411, 0.359857, 0.377, 0.3185, 0.360667, NA, 0.3326, 
+                  0.420714, 0.4432, 0.35475, NA, 0.372, 0.448429, 0.314, 0.333286, 
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+                  0.2665, 0.4486, 0.31725, 0.387, 0.324, 0.2942, 0.386, 0.3905, 
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+                  0.3626, 0.406167, 0.395111, 0.289, 0.377, 0.310833, 0.3435, 0.346545, 
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+                  0.320286, NA, NA, 0.332556, 0.3215, 0.341667, 0.294833, 0.327, 
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+                  0.342833, 0.314667, NA, 0.316, 0.2925, 0.3238, 0.28925, 0.311533, 
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+                  0.309286, 0.315571, 0.3336, 0.320333, 0.3096, 0.3, 0.312625, 
+                  0.3215, 0.31325, 0.3292, 0.3254, 0.3065, 0.318625, 0.297, 0.308, 
+                  0.30825, 0.3462, 0.291588, 0.317, 0.321667, 0.315375, 0.321, 
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+                  0.304, 0.315857, 0.341, 0.32025, 0.3285, 0.307, 0.3155, 0.345667, 
+                  0.318615, 0.318333, 0.317, 0.336, 0.330455, 0.319143, 0.330667, 
+                  NA, 0.28425, NA, 0.336, 0.3175, 0.324, 0.3535, 0.3365, 0.324667, 
+                  0.325143, 0.343, 0.34025, NA, 0.3475, NA, NA, 0.297286, 0.32975, 
+                  0.251, 0.336, 0.331333, 0.307833, 0.3085, 0.296429, 0.338, 0.316667, 
+                  0.29, 0.312, 0.2922, 0.3255, 0.3388, 0.3165, 0.307857, 0.317, 
+                  0.362, 0.318857, 0.233333, 0.2365, 0.254, 0.254111, 0.241333, 
+                  0.23465, NA, NA, 0.357667, 0.3314, 0.329, 0.284, 0.2977, 0.296, 
+                  0.293, 0.337, NA, 0.3575, 0.288, 0.331, NA, 0.194, 0.1755, 0.201, 
+                  0.206889, 0.1912, 0.201158, 0.21125, 0.203, 0.232, 0.1735, 0.237333, 
+                  0.238, 0.253222, 0.28, 0.2325, 0.221, 0.257667, 0.256667, 0.25675, 
+                  0.241, NA, 0.161, 0.161, 0.2704, 0.2645, 0.229, 0.230444, NA, 
+                  0.2064, 0.1675, 0.244, NA, 0.2116, 0.3355, 0.273, 0.29175, 0.317667, 
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+                  0.369, 0.298, 0.276375, 0.29975, 0.315, 0.2704, 0.245, 0.266714, 
+                  0.284333, 0.31175, NA, 0.2456, 0.3175, NA, 0.2846, 0.299, 0.27325, 
+                  0.283875, NA, 0.300875, 0.290143, NA, 0.265, 0.279667, 0.282818, 
+                  0.274333, 0.271875, 0.2632, 0.326, 0.283556, 0.27225, 0.2715, 
+                  0.265, 0.321, 0.293333, 0.2575, 0.275167, 0.258, 0.272889, 0.284, 
+                  0.2535, 0.255, 0.256, NA, 0.2825, 0.282889, 0.279625, 0.292444, 
+                  0.2895, 0.298143, 0.276, 0.3156, 0.289, 0.271, 0.30675, 0.286214, 
+                  0.3, 0.286077, 0.2655, 0.26075, 0.271, NA, 0.3112, 0.399625, 
+                  0.2966, 0.279, 0.301, 0.326333, NA, 0.27, 0.242, 0.3016, 0.30975, 
+                  0.298333, 0.321, 0.3368, 0.284, 0.35625, 0.194, 0.249, 0.264, 
+                  0.2405, 0.2595, 0.26575, 0.220667, 0.2115, 0.228, 0.216833, 0.2584, 
+                  0.268, NA, NA, 0.2708, 0.2595, 0.289333, 0.238, 0.366, 0.20725, 
+                  0.328, 0.26, 0.26, 0.267, 0.255, 0.2515, 0.247333, 0.243, 0.235333, 
+                  0.249125, 0.272667, 0.298667, 0.337, 0.2402, 0.2936, 0.291667, 
+                  0.437333, 0.2565, 0.28, 0.4442, 0.269625, 0.3005, 0.2175, 0.2625, 
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+                  0.335, 0.299, NA, 0.22975, 0.259667, 0.1925, 0.2765, 0.244778, 
+                  0.4185, 0.272333, 0.225, 0.334333, 0.339, NA, 0.270714, 0.194, 
+                  0.3088, 0.252, 0.3375, 0.256, 0.2615, 0.218667, 0.2, 0.297, 0.313, 
+                  0.187875, NA, 0.227, 0.2, 0.2865, 0.299, 0.295, 0.301, 0.294, 
+                  0.410625, 0.198273, 0.2928, 0.260667, 0.338, 0.305, 0.293, 0.334667, 
+                  0.2674, 0.193, NA, 0.231, 0.228, 0.31625, NA, 0.2905, 0.286333, 
+                  0.255, 0.238125, 0.271, 0.18075, 0.234714, 0.2918, 0.274, 0.265, 
+                  0.2215, 0.2005, 0.2775, 0.3745, 0.2855, 0.1955, 0.3055, 0.276, 
+                  0.307, 0.2925, 0.325, 0.197222, 0.242333, 0.295, 0.3035, 0.250286, 
+                  0.35475, NA, 0.267667, 0.3165, 0.38, 0.2614, 0.264667, 0.459, 
+                  0.333, 0.317, NA, 0.349, 0.298286, 0.3015, 0.293, 0.395167, 0.265, 
+                  0.3445, NA, 0.238222, 0.3482, 0.26, 0.259875, 0.293063, 0.2631, 
+                  0.322, 0.3285, NA, 0.3015, 0.282, 0.2855, NA, 0.2955, 0.305, 
+                  0.331, 0.2945, 0.273444, 0.221, 0.2985, 0.262, 0.193, NA, 0.16, 
+                  0.2105, 0.164, 0.157, 0.16, 0.170222, 0.165, 0.16025, 0.19175, 
+                  0.15755, 0.1835, 0.18825, 0.1845, 0.148667, 0.165667, 0.152, 
+                  0.159, 0.1861, 0.127, 0.1328, 0.159, 0.131, 0.13, 0.154, 0.09, 
+                  0.129857, 0.129833, 0.2025, 0.234, 0.1505, 0.166, 0.15525, 0.225, 
+                  0.205889, 0.162214, 0.1693, 0.185882, NA, 0.142667, 0.180667, 
+                  0.16, 0.2005, 0.189429, 0.1966, 0.156333, 0.21, 0.16125, 0.211167, 
+                  0.178667, NA, 0.144, 0.1745, 0.223, 0.162037, 0.163, 0.164571, 
+                  0.2026, 0.16775, 0.1975, NA, 0.1825, 0.162167, 0.173333, 0.169, 
+                  0.23775, 0.166, 0.164667, 0.18025, 0.1609, 0.196, 0.168667, 0.159667, 
+                  0.18725, 0.185, 0.174333, 0.174333, 0.1834, 0.207571, 0.2105, 
+                  NA, 0.16925, 0.171364, 0.176167, 0.2685, 0.166667, 0.209, 0.1815, 
+                  0.188, 0.17325, 0.173211, 0.14825, NA, 0.200455, 0.26025, 0.177095, 
+                  NA, NA, 0.224294, 0.1745, 0.179571, 0.169, 0.1865, 0.1765, 0.179143, 
+                  0.2005, NA, 0.203, 0.171789, 0.175462, 0.17, 0.231, 0.201833, 
+                  0.128, NA, 0.21225, 0.180368, 0.154, 0.174, 0.188, 0.20175, 0.1825, 
+                  0.173714, 0.172333, 0.142, 0.1726, 0.162524, 0.161, 0.194667, 
+                  0.176, 0.165167, 0.1945, 0.214667, 0.202, 0.219, 0.192636, 0.265, 
+                  0.1985, 0.212429, 0.171167, 0.1702, 0.169, 0.147333, 0.2315, 
+                  0.180667, 0.171636, 0.2092, 0.1525, NA, 0.16913, 0.176818, NA, 
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+                                   "AT5G42080", "AT5G44240", "AT5G45130", "AT5G45470", "AT5G45750", 
+                                   "AT5G47910", "AT5G47990", "AT5G48000", "AT5G48030", "AT5G50370", 
+                                   "AT5G56730", "AT5G57800", "AT5G58100", "AT5G63030", "AT5G64100", 
+                                   "AT5G65270", "AT1G66280", "AT1G04120", "AT1G53210", "AT1G63010", 
+                                   "AT2G02040", "AT5G09400", "AT5G39510", "AT5G51570", "AT1G12840", 
+                                   "AT1G15690", "AT1G30400", "AT1G78900", "AT2G21410", "AT2G34660", 
+                                   "AT2G41560", "AT3G28710", "AT3G42050", "AT3G58730", "AT4G11150", 
+                                   "AT4G39080"),                                                                        
+                                 c("M1F1A", "M1F4A", "M1F7A", "M1F11A", "M1F2B", 
+                                   "M1F5B", "M1F8B", "M1F11B", "M2F1A", "M2F4A", "M2F7A", "M2F11A", 
+                                   "M2F2B", "M2F5B", "M2F8B", "M2F11B")))
> 
> ## dput(rowData(se_na2)$randna)
> randna <- c(TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, FALSE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, FALSE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, FALSE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, FALSE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, FALSE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, 
+             TRUE, TRUE, TRUE)
> 
> library("testthat")
> library("MsCoreUtils")

Attaching package: 'MsCoreUtils'

The following object is masked from 'package:stats':

    smooth

> 
> test_check("MsCoreUtils")
Iterations of EM: 
1...2...3...4...5...6...7...8...9...10...11...
[1] 0.07947339
══ testthat results  ═══════════════════════════════════════════════════════════
[ OK: 333 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
 31.873   0.602  32.512

Example timings

MsCoreUtils.Rcheck/MsCoreUtils-Ex.timings

nameusersystemelapsed
aggregate_by_vector0.0210.0020.024
binning0.0020.0000.002
check0.0010.0000.001
coerce0.0000.0000.001
dotproduct0.0010.0000.001
group0.0010.0010.002
i2index0.0010.0000.001
imputation0.0130.0060.018
localMaxima0.0000.0010.001
matching0.0060.0020.007
medianPolish0.0040.0000.004
noise0.0010.0000.002
normalize0.0100.0040.014
peakRegionMask0.0050.0000.005
ppm0.0010.0000.001
range0.0010.0010.001
rbindFill0.0080.0010.009
refineCentroids0.0100.0010.011
rla0.0020.0010.003
robustSummary0.0090.0010.010
smooth0.0470.0010.048
validation0.0010.0000.001
valleys0.0040.0020.006
vapply000