Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:11 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE MODA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1114/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MODA 1.14.0 Dong Li
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: MODA |
Version: 1.14.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:MODA.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings MODA_1.14.0.tar.gz |
StartedAt: 2020-10-17 03:21:01 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 03:23:14 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 133.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MODA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:MODA.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings MODA_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/MODA.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MODA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MODA’ version ‘1.14.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MODA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE MIcondition: no visible binding for global variable ‘pwd’ WeightedModulePartitionSpectral: no visible binding for global variable ‘indicator’ Undefined global functions or variables: indicator pwd * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... NOTE Package has no Sweave vignette sources and no VignetteBuilder field. * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.11-bioc/meat/MODA.Rcheck/00check.log’ for details.
MODA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL MODA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘MODA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MODA)
MODA.Rcheck/MODA-Ex.timings
name | user | system | elapsed | |
CompareAllNets | 1.266 | 0.060 | 1.325 | |
PartitionDensity | 0.113 | 0.000 | 0.112 | |
PartitionModularity | 0.113 | 0.004 | 0.117 | |
WeightedModulePartitionAmoutain | 2.348 | 0.352 | 2.700 | |
WeightedModulePartitionHierarchical | 0.202 | 0.000 | 0.203 | |
WeightedModulePartitionLouvain | 0.048 | 0.004 | 0.053 | |
WeightedModulePartitionSpectral | 0.890 | 0.012 | 0.901 | |
comparemodulestwonets | 0.584 | 0.000 | 0.584 | |
datExpr1 | 0.004 | 0.000 | 0.004 | |
datExpr2 | 0.000 | 0.004 | 0.004 | |