Robert Bentham
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/MCbiclust |
| Branch: RELEASE_3_11 |
| Last Commit: 864f992 |
| Last Changed Date: 2020-04-27 15:05:04 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:01 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE MCbiclust PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1008/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MCbiclust 1.12.0 Robert Bentham
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: MCbiclust |
| Version: 1.12.0 |
| Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MCbiclust.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings MCbiclust_1.12.0.tar.gz |
| StartedAt: 2020-10-17 05:43:38 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 05:57:50 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 851.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MCbiclust.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MCbiclust.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings MCbiclust_1.12.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/MCbiclust.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MCbiclust/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MCbiclust' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MCbiclust' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
SilhouetteClustGroups 61.39 2.54 64.55
CVPlot 35.03 1.21 36.25
CVEval 20.52 1.44 22.42
PC1VecFun 18.04 0.78 19.33
SampleSort 16.21 0.74 17.43
PointScoreCalc 14.50 0.95 15.76
ThresholdBic 12.46 1.08 13.98
GOEnrichmentAnalysis 11.48 0.54 12.03
HclustGenesHiCor 5.91 0.52 6.44
FindSeed 5.52 0.38 5.89
CorScoreCalc 5.12 0.44 5.56
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
SilhouetteClustGroups 68.63 4.19 73.31
CVPlot 26.23 1.54 28.09
SampleSort 18.50 1.30 20.25
ThresholdBic 18.46 1.28 20.22
PointScoreCalc 17.47 0.91 18.86
CVEval 13.96 1.00 15.36
PC1VecFun 12.92 1.08 14.48
GOEnrichmentAnalysis 11.75 0.47 12.22
FindSeed 5.18 0.46 5.64
HclustGenesHiCor 5.05 0.54 5.59
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
MCbiclust.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MCbiclust_1.12.0.tar.gz && rm -rf MCbiclust.buildbin-libdir && mkdir MCbiclust.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MCbiclust.buildbin-libdir MCbiclust_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MCbiclust_1.12.0.zip && rm MCbiclust_1.12.0.tar.gz MCbiclust_1.12.0.zip
###
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install for i386
* installing *source* package 'MCbiclust' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MCbiclust'
finding HTML links ... done
CCLE_samples html
CCLE_small html
CVEval html
CVPlot html
CorScoreCalc html
FindSeed html
GOEnrichmentAnalysis html
HclustGenesHiCor html
MCbiclust html
Mitochondrial_genes html
PC1VecFun html
PointScoreCalc html
SampleSort html
SilhouetteClustGroups html
ThresholdBic html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MCbiclust' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MCbiclust' as MCbiclust_1.12.0.zip
* DONE (MCbiclust)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'MCbiclust' successfully unpacked and MD5 sums checked
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MCbiclust.Rcheck/tests_i386/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(MCbiclust)
>
> test_check("MCbiclust")
== testthat results ===========================================================
[ OK: 23 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
119.90 2.37 123.04
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MCbiclust.Rcheck/tests_x64/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(MCbiclust)
>
> test_check("MCbiclust")
== testthat results ===========================================================
[ OK: 23 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
99.85 1.98 102.32
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MCbiclust.Rcheck/examples_i386/MCbiclust-Ex.timings
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MCbiclust.Rcheck/examples_x64/MCbiclust-Ex.timings
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