Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:55:04 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE MBQN PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1005/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MBQN 2.0.3 Ariane Schad
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: MBQN |
Version: 2.0.3 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:MBQN.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings MBQN_2.0.3.tar.gz |
StartedAt: 2020-10-17 02:51:23 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 02:54:13 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 170.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MBQN.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:MBQN.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings MBQN_2.0.3.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/MBQN.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MBQN/DESCRIPTION’ ... OK * this is package ‘MBQN’ version ‘2.0.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MBQN’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getPXDfile 1.314 0.213 8.53 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
MBQN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL MBQN ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘MBQN’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MBQN)
MBQN.Rcheck/MBQN-Ex.timings
name | user | system | elapsed | |
getKminmax | 0.001 | 0.000 | 0.002 | |
getPXDfile | 1.314 | 0.213 | 8.530 | |
getPvalue | 0.343 | 0.048 | 0.470 | |
mbqn | 0.007 | 0.000 | 0.008 | |
mbqnBoxplot | 0.039 | 0.004 | 0.043 | |
mbqnGetNRIfeatures | 0.556 | 0.036 | 0.592 | |
mbqnGetThreshold | 0.272 | 0.012 | 0.284 | |
mbqnLoadFile | 1.910 | 0.244 | 2.154 | |
mbqnNRI | 0.006 | 0.000 | 0.006 | |
mbqnPlotAll | 0.021 | 0.000 | 0.021 | |
mbqnPlotRI | 0.490 | 0.004 | 0.494 | |
mbqnSimuData | 0.16 | 0.10 | 0.26 | |
mbqnSimuDistortion | 0.028 | 0.000 | 0.027 | |
truncateDecimals | 0 | 0 | 0 | |