Stefano de Pretis
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/LowMACA |
| Branch: master |
| Last Commit: 8338821 |
| Last Changed Date: 2019-10-29 13:39:11 -0500 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-01-16 13:41:47 -0500 (Thu, 16 Jan 2020).
| Package 919/1818 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LowMACA 1.17.0 Stefano de Pretis
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: LowMACA |
| Version: 1.17.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:LowMACA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings LowMACA_1.17.0.tar.gz |
| StartedAt: 2020-01-16 05:57:13 -0500 (Thu, 16 Jan 2020) |
| EndedAt: 2020-01-16 06:18:08 -0500 (Thu, 16 Jan 2020) |
| EllapsedTime: 1255.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: LowMACA.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:LowMACA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings LowMACA_1.17.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/LowMACA.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LowMACA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LowMACA’ version ‘1.17.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LowMACA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
allPfamAnalysis 218.927 12.606 231.912
lfmSingleSequence 111.817 5.896 117.952
setup 30.888 80.250 227.817
alignSequences 23.861 77.674 210.669
LowMACA-class 18.019 1.335 28.008
LowMACA-package 11.985 0.685 15.170
lmPlot 5.674 0.171 5.851
lmPlotSingleSequence 5.396 0.187 5.629
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
LowMACA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL LowMACA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘LowMACA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... ** testing if installed package can be loaded from final location Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... ** testing if installed package keeps a record of temporary installation path * DONE (LowMACA)
LowMACA.Rcheck/LowMACA-Ex.timings
| name | user | system | elapsed | |
| BLOSUM62 | 0.017 | 0.005 | 0.021 | |
| LowMACA-class | 18.019 | 1.335 | 28.008 | |
| LowMACA-package | 11.985 | 0.685 | 15.170 | |
| LowMACA_AML | 0.039 | 0.011 | 0.050 | |
| alignSequences | 23.861 | 77.674 | 210.669 | |
| allPfamAnalysis | 218.927 | 12.606 | 231.912 | |
| bpAll | 1.729 | 0.073 | 1.803 | |
| entropy | 1.691 | 0.133 | 1.823 | |
| getMutations | 1.879 | 0.107 | 3.518 | |
| lfm | 2.686 | 0.162 | 2.848 | |
| lfmSingleSequence | 111.817 | 5.896 | 117.952 | |
| lmAlignment | 0.063 | 0.013 | 0.076 | |
| lmEntropy | 1.716 | 0.108 | 1.824 | |
| lmMutations | 0.076 | 0.015 | 0.092 | |
| lmObj | 0.202 | 0.021 | 0.223 | |
| lmParams | 0.805 | 0.063 | 0.876 | |
| lmPlot | 5.674 | 0.171 | 5.851 | |
| lmPlotSingleSequence | 5.396 | 0.187 | 5.629 | |
| mapMutations | 0.637 | 0.033 | 0.671 | |
| newLowMACA | 3.628 | 0.169 | 3.796 | |
| nullProfile | 1.656 | 0.103 | 1.760 | |
| parallelize | 0.751 | 0.040 | 0.791 | |
| protter | 1.646 | 0.096 | 1.941 | |
| setup | 30.888 | 80.250 | 227.817 | |
| showTumorType | 0.094 | 0.025 | 0.164 | |