Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:58 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE LOBSTAHS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 947/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
LOBSTAHS 1.14.0 James Collins
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: LOBSTAHS |
Version: 1.14.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/LOBSTAHS_1.14.0.tar.gz && rm -rf LOBSTAHS.buildbin-libdir && mkdir LOBSTAHS.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LOBSTAHS.buildbin-libdir LOBSTAHS_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL LOBSTAHS_1.14.0.zip && rm LOBSTAHS_1.14.0.tar.gz LOBSTAHS_1.14.0.zip |
StartedAt: 2020-10-16 19:01:45 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 19:03:08 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 82.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/LOBSTAHS_1.14.0.tar.gz && rm -rf LOBSTAHS.buildbin-libdir && mkdir LOBSTAHS.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LOBSTAHS.buildbin-libdir LOBSTAHS_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL LOBSTAHS_1.14.0.zip && rm LOBSTAHS_1.14.0.tar.gz LOBSTAHS_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2702k 100 2702k 0 0 13.6M 0 --:--:-- --:--:-- --:--:-- 14.1M install for i386 * installing *source* package 'LOBSTAHS' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning message: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA' Creating a new generic function for 'polarity<-' in package 'LOBSTAHS' ** help *** installing help indices converting help for package 'LOBSTAHS' finding HTML links ... done LOBSet-class html finding level-2 HTML links ... done LOBSet html LOBdbase-class html LOBdbase html LOBdefaults html doLOBscreen html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpA1Qe49/R.INSTALL28d85dad1e5b/LOBSTAHS/man/doLOBscreen.Rd:20: file link 'findIsotopes' in package 'CAMERA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpA1Qe49/R.INSTALL28d85dad1e5b/LOBSTAHS/man/doLOBscreen.Rd:41: file link 'findIsotopes' in package 'CAMERA' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpA1Qe49/R.INSTALL28d85dad1e5b/LOBSTAHS/man/doLOBscreen.Rd:125: file link 'findIsotopes' in package 'CAMERA' does not exist and so has been treated as a topic exportDBtoCSV html extractLOBdbasedata html generateLOBdbase html getLOBpeaklist html loadLOBdbase html ** building package indices ** installing vignettes 'LOBSTAHS.Rmd' using 'UTF-8' ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA' Warning: multiple methods tables found for 'polarity<-' ** testing if installed package can be loaded from final location Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA' Warning: multiple methods tables found for 'polarity<-' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'LOBSTAHS' ... ** testing if installed package can be loaded Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA' Warning: multiple methods tables found for 'polarity<-' * MD5 sums packaged installation of 'LOBSTAHS' as LOBSTAHS_1.14.0.zip * DONE (LOBSTAHS) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'LOBSTAHS' successfully unpacked and MD5 sums checked