| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-01-16 13:48:10 -0500 (Thu, 16 Jan 2020).
| Package 866/1818 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| IsoformSwitchAnalyzeR 1.9.0 Kristoffer Vitting-Seerup
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: IsoformSwitchAnalyzeR |
| Version: 1.9.0 |
| Command: rm -rf IsoformSwitchAnalyzeR.buildbin-libdir && mkdir IsoformSwitchAnalyzeR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh IsoformSwitchAnalyzeR_1.9.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R IsoformSwitchAnalyzeR.buildbin-libdir |
| StartedAt: 2020-01-16 11:09:49 -0500 (Thu, 16 Jan 2020) |
| EndedAt: 2020-01-16 11:11:17 -0500 (Thu, 16 Jan 2020) |
| EllapsedTime: 88.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: IsoformSwitchAnalyzeR_1.9.0.tgz |
| PackageFileSize: 6.248 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf IsoformSwitchAnalyzeR.buildbin-libdir && mkdir IsoformSwitchAnalyzeR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh IsoformSwitchAnalyzeR_1.9.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R IsoformSwitchAnalyzeR.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=IsoformSwitchAnalyzeR.buildbin-libdir IsoformSwitchAnalyzeR_1.9.0.tar.gz' >>>>>>> * installing *source* package ‘IsoformSwitchAnalyzeR’ ... ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c utils.c -o utils.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o IsoformSwitchAnalyzeR.so utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.11-bioc/meat/IsoformSwitchAnalyzeR.buildbin-libdir/00LOCK-IsoformSwitchAnalyzeR/00new/IsoformSwitchAnalyzeR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IsoformSwitchAnalyzeR) >>>>>>> >>>>>>> FIXING LINKS FOR IsoformSwitchAnalyzeR.buildbin-libdir/IsoformSwitchAnalyzeR/libs//IsoformSwitchAnalyzeR.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "IsoformSwitchAnalyzeR.buildbin-libdir/IsoformSwitchAnalyzeR/libs//IsoformSwitchAnalyzeR.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.3.dylib" "IsoformSwitchAnalyzeR.buildbin-libdir/IsoformSwitchAnalyzeR/libs//IsoformSwitchAnalyzeR.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.5.2.dylib" "IsoformSwitchAnalyzeR.buildbin-libdir/IsoformSwitchAnalyzeR/libs//IsoformSwitchAnalyzeR.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.dylib" "IsoformSwitchAnalyzeR.buildbin-libdir/IsoformSwitchAnalyzeR/libs//IsoformSwitchAnalyzeR.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "IsoformSwitchAnalyzeR.buildbin-libdir/IsoformSwitchAnalyzeR/libs//IsoformSwitchAnalyzeR.so"